Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y3M	38889	2024-11-18	2024-01-29	3.25	2.64	—	3.2	0.007	1.17	0.0	0.06	11.37	0.01	2.299	4.87	0.11	11.1	88.3	0.6	-5.56	0.67	0.56	1.24	3.3	0.004	0.74	0.0	0.04	15.11	0.00	2.352	8.63	1.40	9.7	90.0	0.4	-1.51	1.94	0.77	0.75	1.87	16793	2017	3	0	0	0	0	logfile
✔	8Y3M	38889	2024-10-14	2024-01-29	3.25	2.64	—	3.2	0.007	1.17	0.0	0.06	11.37	0.01	2.299	4.87	0.11	11.1	88.3	0.6	-5.56	0.67	0.56	1.24	3.3	0.004	0.74	0.0	0.04	15.11	0.00	2.352	8.63	1.40	9.7	90.0	0.4	-1.51	1.94	0.77	0.75	1.87	16793	2017	3	0	0	0	0	logfile
✔	8VUE	43529	2024-08-11	2024-01-29	3.59	3.93	3.71	3.8	0.007	0.94	9.0	0.06	15.99	0.01	1.828	15.02	4.98	6.1	93.5	0.3	-2.26	0.79	0.84	2.25	3.8	0.004	0.67	0.0	0.04	15.91	0.00	2.434	8.22	2.91	3.9	96.1	0.0	0.06	1.72	0.78	0.84	2.21	21501	2754	15	0	3	0	0	logfile
✘	8VUQ	43536	2025-02-13	2024-01-29	3.85	4.17	3.94	4.1	0.003	0.62	0.0	0.04	17.33	0.01	2.133	8.08	0.66	12.1	87.5	0.4	-1.68	0.71	0.83	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8657	1161	4	0	0	0	0	logfile
✔	8Y3M	38889	2024-09-27	2024-01-29	3.25	2.64	—	3.2	0.007	1.17	0.0	0.06	11.37	0.01	2.299	4.87	0.11	11.1	88.3	0.6	-5.56	0.67	0.56	1.24	3.3	0.004	0.74	0.0	0.04	15.11	0.00	2.352	8.63	1.40	9.7	90.0	0.4	-1.51	1.94	0.77	0.75	1.87	16793	2017	3	0	0	0	0	logfile
✔	8VUL	43532	2024-12-28	2024-01-29	3.83	4.04	6.77	4.0	0.004	0.68	0.0	0.04	16.80	0.01	2.218	7.73	0.27	8.8	90.9	0.3	-1.67	0.75	0.82	1.77	4.0	0.003	0.67	0.0	0.04	17.25	0.00	2.429	5.94	4.50	9.3	90.4	0.3	-1.52	0.30	0.74	0.82	1.89	7158	963	4	0	0	0	0	logfile
✔	8VUL	43532	2024-11-14	2024-01-29	3.83	4.04	6.77	4.0	0.004	0.68	0.0	0.04	16.80	0.01	2.218	7.73	0.27	8.8	90.9	0.3	-1.67	0.75	0.82	1.77	4.0	0.003	0.67	0.0	0.04	17.25	0.00	2.429	5.94	4.50	9.3	90.4	0.3	-1.52	0.30	0.74	0.82	1.89	7158	963	4	0	0	0	0	logfile
✔	8Y3M	38889	2024-12-31	2024-01-29	3.25	2.64	—	3.2	0.007	1.17	0.0	0.06	11.37	0.01	2.299	4.87	0.11	11.1	88.3	0.6	-5.56	0.67	0.56	1.24	3.3	0.004	0.74	0.0	0.04	15.11	0.00	2.352	8.63	1.40	9.7	90.0	0.4	-1.51	1.94	0.77	0.75	1.87	16793	2017	3	0	0	0	0	logfile
✔	8VUE	43529	2024-07-25	2024-01-29	3.59	3.93	3.71	3.8	0.007	0.94	9.0	0.06	15.99	0.01	1.828	15.02	4.98	6.1	93.5	0.3	-2.26	0.79	0.84	2.25	3.8	0.002	0.62	0.0	0.04	16.01	0.00	2.158	9.33	2.37	3.2	96.8	0.0	0.13	1.71	0.78	0.83	2.27	21501	2754	15	0	3	0	0	logfile
✔	8Y3P	38894	2025-01-21	2024-01-29	3.48	3.68	3.58	3.6	0.004	0.76	0.0	0.05	13.55	0.01	2.296	6.88	0.00	4.8	95.2	0.0	-1.81	0.71	0.79	2.80	3.6	0.003	0.59	0.0	0.04	15.45	0.00	2.544	9.18	2.30	4.7	95.3	0.0	-1.13	0.35	0.73	0.84	2.49	17028	2163	9	0	0	0	0	logfile
✔	8Y3P	38894	2024-11-18	2024-01-29	3.48	3.68	3.58	3.6	0.004	0.76	0.0	0.05	13.55	0.01	2.296	6.88	0.00	4.8	95.2	0.0	-1.81	0.71	0.79	2.80	3.7	0.003	0.60	0.0	0.04	15.48	0.00	2.535	9.15	1.71	5.5	94.5	0.0	-1.17	0.36	0.72	0.84	2.42	17028	2163	9	0	0	0	0	logfile
✔	8Y3P	38894	2024-10-14	2024-01-29	3.48	3.68	3.58	3.6	0.004	0.76	0.0	0.05	13.55	0.01	2.296	6.88	0.00	4.8	95.2	0.0	-1.81	0.71	0.79	2.80	3.7	0.003	0.60	0.0	0.04	15.48	0.00	2.535	9.15	1.71	5.5	94.5	0.0	-1.17	0.36	0.72	0.84	2.42	17028	2163	9	0	0	0	0	logfile
✔	8Y3P	38894	2024-09-27	2024-01-29	3.48	3.68	3.58	3.6	0.004	0.76	0.0	0.05	13.55	0.01	2.296	6.88	0.00	4.8	95.2	0.0	-1.81	0.71	0.79	2.80	3.7	0.003	0.60	0.0	0.04	15.48	0.00	2.535	9.15	1.71	5.5	94.5	0.0	-1.17	0.36	0.72	0.84	2.42	17028	2163	9	0	0	0	0	logfile
✔	8VUS	43538	2024-09-30	2024-01-29	3.99	4.28	4.05	4.1	0.004	0.67	0.0	0.04	16.76	0.00	2.100	12.56	0.34	13.2	86.4	0.4	-2.35	0.82	0.81	1.49	4.1	0.005	0.74	0.0	0.05	17.07	0.00	2.377	9.86	5.72	14.0	85.6	0.4	-2.15	0.31	0.82	0.81	1.39	25006	3475	8	0	0	0	0	logfile
✔	8VUR	43537	2024-09-30	2024-01-29	3.84	4.14	3.91	4.1	0.003	0.60	0.0	0.04	16.37	0.00	2.140	8.53	0.42	11.6	88.0	0.4	-1.26	0.75	0.81	1.36	4.1	0.003	0.61	0.0	0.04	16.62	0.00	2.491	6.14	5.89	10.8	88.9	0.3	-0.86	0.90	0.75	0.83	0.95	24978	3587	6	0	0	0	0	logfile
✘	8VUR	43537	2025-01-26	2024-01-29	3.84	4.14	3.91	4.1	0.003	0.60	0.0	0.04	16.37	0.00	2.140	8.53	0.42	11.6	88.0	0.4	-1.26	0.75	0.81	1.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24978	3587	6	0	0	0	0	logfile
✔	8RU0	19501	2025-01-18	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.004	0.86	1.0	0.05	16.36	0.00	1.986	5.45	2.73	3.2	96.7	0.1	0.31	1.31	0.64	0.83	2.31	11660	1476	8	0	11	0	0	logfile
✔	8RU0	19501	2024-12-29	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.002	0.55	0.0	0.04	16.27	0.00	2.026	4.89	2.41	2.6	97.3	0.1	0.61	1.31	0.64	0.83	2.24	11660	1476	8	0	11	0	0	logfile
✔	8RU0	19501	2024-11-16	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.002	0.55	0.0	0.04	16.27	0.00	2.026	4.89	2.41	2.6	97.3	0.1	0.61	1.31	0.64	0.83	2.24	11660	1476	8	0	11	0	0	logfile
✔	8RU0	19501	2024-10-12	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.002	0.55	0.0	0.04	16.27	0.00	2.026	4.89	2.41	2.6	97.3	0.1	0.61	1.31	0.64	0.83	2.24	11660	1476	8	0	11	0	0	logfile

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