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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8YZB | 39688 | 2025-03-11 | 2024-04-06 | 3.29 | 3.29 | 3.39 | 1.8 | 0.003 | 0.54 | 1.0 | 0.04 | 7.28 | 0.00 | 2.242 | 2.62 | 1.43 | 2.2 | 97.8 | 0.0 | -0.85 | 0.86 | 0.81 | 2.16 | 1.4 | 0.003 | 0.74 | 0.0 | 0.04 | 13.57 | 0.00 | 2.294 | 4.05 | 1.15 | 3.3 | 96.7 | 0.0 | 0.72 | 1.75 | 0.90 | 0.89 | 2.67 | 6448 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YZB | 39688 | 2025-06-05 | 2024-04-06 | 3.29 | 3.29 | 3.39 | 1.8 | 0.003 | 0.54 | 1.0 | 0.04 | 7.28 | 0.00 | 2.242 | 2.62 | 1.43 | 2.2 | 97.8 | 0.0 | -0.85 | 0.86 | 0.81 | 2.16 | 1.4 | 0.003 | 0.77 | 0.0 | 0.05 | 13.60 | 0.00 | 2.295 | 4.29 | 1.43 | 3.8 | 96.2 | 0.0 | 0.60 | 1.59 | 0.90 | 0.90 | 2.79 | 6448 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YZD | 39690 | 2025-03-11 | 2024-04-06 | 3.07 | 2.88 | 3.09 | 1.9 | 0.002 | 0.42 | 0.0 | 0.04 | 7.78 | 0.00 | 2.299 | 1.99 | 1.29 | 2.2 | 97.8 | 0.0 | -1.69 | 0.87 | 0.87 | 2.54 | 1.5 | 0.004 | 0.62 | 0.0 | 0.04 | 14.18 | 0.00 | 2.047 | 2.39 | 2.01 | 3.4 | 96.6 | 0.0 | 0.53 | 0.65 | 0.90 | 0.92 | 2.38 | 6436 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YZB | 39688 | 2025-02-11 | 2024-04-06 | 3.29 | 3.29 | 3.38 | 1.8 | 0.003 | 0.54 | 1.0 | 0.04 | 7.28 | 0.00 | 2.242 | 2.62 | 1.43 | 2.2 | 97.8 | 0.0 | -0.85 | 0.86 | 0.81 | 2.16 | 1.4 | 0.003 | 0.75 | 0.0 | 0.05 | 13.64 | 0.00 | 2.265 | 3.65 | 1.72 | 3.4 | 96.6 | 0.0 | 0.49 | 1.59 | 0.90 | 0.90 | 2.64 | 6448 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YZB | 39688 | 2025-04-27 | 2024-04-06 | 3.29 | 3.29 | 3.39 | 1.8 | 0.003 | 0.54 | 1.0 | 0.04 | 7.28 | 0.00 | 2.242 | 2.62 | 1.43 | 2.2 | 97.8 | 0.0 | -0.85 | 0.86 | 0.81 | 2.16 | 1.4 | 0.003 | 0.77 | 0.0 | 0.05 | 13.60 | 0.00 | 2.295 | 4.29 | 1.43 | 3.8 | 96.2 | 0.0 | 0.60 | 1.59 | 0.90 | 0.90 | 2.79 | 6448 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YZD | 39690 | 2025-06-05 | 2024-04-06 | 3.07 | 2.88 | 3.09 | 1.9 | 0.002 | 0.42 | 0.0 | 0.04 | 7.78 | 0.00 | 2.299 | 1.99 | 1.29 | 2.2 | 97.8 | 0.0 | -1.69 | 0.87 | 0.87 | 2.54 | 1.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.07 | 0.00 | 2.302 | 2.31 | 1.72 | 3.3 | 96.7 | 0.0 | 0.53 | 0.65 | 0.90 | 0.91 | 2.37 | 6436 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YZB | 39688 | 2025-05-10 | 2024-04-06 | 3.29 | 3.29 | 3.39 | 1.8 | 0.003 | 0.54 | 1.0 | 0.04 | 7.28 | 0.00 | 2.242 | 2.62 | 1.43 | 2.2 | 97.8 | 0.0 | -0.85 | 0.86 | 0.81 | 2.16 | 1.4 | 0.003 | 0.77 | 0.0 | 0.05 | 13.64 | 0.00 | 2.265 | 3.65 | 1.72 | 3.4 | 96.6 | 0.0 | 0.49 | 1.59 | 0.90 | 0.90 | 2.64 | 6448 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YZD | 39690 | 2025-05-10 | 2024-04-06 | 3.07 | 2.88 | 3.09 | 1.9 | 0.002 | 0.42 | 0.0 | 0.04 | 7.78 | 0.00 | 2.299 | 1.99 | 1.29 | 2.2 | 97.8 | 0.0 | -1.69 | 0.87 | 0.87 | 2.54 | 1.5 | 0.005 | 0.67 | 0.0 | 0.04 | 13.94 | 0.00 | 2.349 | 2.31 | 2.44 | 3.4 | 96.6 | 0.0 | 0.29 | 0.65 | 0.90 | 0.92 | 2.59 | 6436 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YZD | 39690 | 2025-04-27 | 2024-04-06 | 3.07 | 2.88 | 3.09 | 1.9 | 0.002 | 0.42 | 0.0 | 0.04 | 7.78 | 0.00 | 2.299 | 1.99 | 1.29 | 2.2 | 97.8 | 0.0 | -1.69 | 0.87 | 0.87 | 2.54 | 1.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.07 | 0.00 | 2.302 | 2.31 | 1.72 | 3.3 | 96.7 | 0.0 | 0.53 | 0.65 | 0.90 | 0.91 | 2.37 | 6436 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 9EWZ | 50027 | 2025-05-13 | 2024-04-05 | 2.22 | 3.01 | 2.28 | 2.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.89 | 0.00 | 2.190 | 3.54 | 0.29 | 3.8 | 96.2 | 0.0 | 0.75 | 0.84 | 0.88 | 4.79 | 2.8 | 0.003 | 0.56 | 0.0 | 0.04 | 17.81 | 0.00 | 2.211 | 3.39 | 0.96 | 4.2 | 95.8 | 0.0 | 1.50 | 1.10 | 0.84 | 0.89 | 3.95 | 10780 | 1205 | 4 | 50 | 2 | 0 | 0 | logfile |
✔ | 9EWZ | 50027 | 2025-06-09 | 2024-04-05 | 2.22 | 3.01 | 2.28 | 2.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.89 | 0.00 | 2.190 | 3.54 | 0.29 | 3.8 | 96.2 | 0.0 | 0.75 | 0.84 | 0.88 | 4.79 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 17.83 | 0.00 | 2.222 | 3.35 | 0.87 | 4.1 | 95.9 | 0.0 | 1.41 | 1.10 | 0.84 | 0.89 | 3.87 | 10780 | 1205 | 4 | 50 | 2 | 0 | 0 | logfile |
✔ | 9EWX | 50025 | 2024-09-29 | 2024-04-05 | 3.17 | 2.84 | 3.08 | 3.0 | 0.002 | 0.42 | 0.0 | 0.04 | 17.57 | 0.00 | 2.031 | 3.78 | 0.88 | 0.7 | 99.3 | 0.0 | 2.80 | 0.68 | 0.88 | 2.05 | 3.0 | 0.004 | 0.54 | 0.0 | 0.05 | 16.75 | 0.00 | 2.540 | 5.78 | 4.31 | 2.4 | 97.6 | 0.0 | 2.71 | 0.96 | 0.68 | 0.89 | 1.78 | 23989 | 3289 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 9EWX | 50025 | 2025-01-25 | 2024-04-05 | 3.17 | 2.84 | 3.08 | 3.0 | 0.002 | 0.42 | 0.0 | 0.04 | 17.57 | 0.00 | 2.031 | 3.78 | 0.88 | 0.7 | 99.3 | 0.0 | 2.80 | 0.68 | 0.88 | 2.05 | 3.0 | 0.004 | 0.56 | 0.0 | 0.05 | 16.82 | 0.00 | 2.541 | 5.51 | 2.92 | 2.7 | 97.3 | 0.0 | 2.50 | 0.96 | 0.68 | 0.89 | 1.85 | 23989 | 3289 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 9EWX | 50025 | 2025-05-23 | 2024-04-05 | 3.17 | 2.84 | 3.08 | 3.1 | 0.002 | 0.42 | 0.0 | 0.04 | 17.57 | 0.00 | 2.318 | 3.78 | 0.88 | 0.7 | 99.3 | 0.0 | 2.80 | 0.68 | 0.88 | 2.05 | 3.0 | 0.002 | 0.49 | 0.0 | 0.05 | 16.67 | 0.00 | 2.549 | 5.54 | 3.77 | 1.3 | 98.7 | 0.0 | 2.77 | 0.49 | 0.68 | 0.89 | 1.90 | 23989 | 3289 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 9EWX | 50025 | 2025-06-20 | 2024-04-05 | 3.17 | 2.84 | 3.08 | 3.1 | 0.002 | 0.42 | 0.0 | 0.04 | 17.57 | 0.00 | 2.318 | 3.78 | 0.88 | 0.7 | 99.3 | 0.0 | 2.80 | 0.68 | 0.88 | 2.05 | 3.0 | 0.004 | 0.54 | 0.0 | 0.05 | 16.69 | 0.00 | 2.536 | 5.06 | 4.12 | 2.3 | 97.7 | 0.0 | 2.52 | 0.49 | 0.68 | 0.89 | 1.85 | 23989 | 3289 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 9BAZ | 44415 | 2025-03-13 | 2024-04-05 | 2.76 | 3.45 | 2.80 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 16.56 | 0.00 | 2.117 | 12.04 | 0.50 | 3.2 | 96.8 | 0.0 | 0.19 | 0.71 | 0.71 | 2.69 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.86 | 0.00 | 2.417 | 9.47 | 3.02 | 3.4 | 96.6 | 0.0 | 0.19 | 0.29 | 0.71 | 0.72 | 2.38 | 8283 | 1090 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 9BAZ | 44415 | 2024-09-24 | 2024-04-05 | 2.76 | 3.45 | 2.80 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 16.56 | 0.00 | 2.117 | 12.04 | 0.50 | 3.2 | 96.8 | 0.0 | 0.19 | 0.71 | 0.71 | 2.69 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.88 | 0.00 | 2.437 | 9.22 | 3.14 | 3.3 | 96.7 | 0.0 | 0.27 | 0.30 | 0.71 | 0.72 | 2.49 | 8283 | 1090 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 9BBC | 44417 | 2024-11-15 | 2024-04-05 | 3.3 | 4.25 | 3.36 | 3.7 | 0.003 | 0.92 | 0.0 | 0.05 | 15.19 | 0.00 | 2.206 | 13.57 | 0.56 | 3.7 | 96.2 | 0.1 | 0.51 | 0.81 | 0.82 | 2.28 | 3.8 | 0.005 | 0.89 | 0.0 | 0.05 | 15.65 | 0.00 | 2.436 | 13.27 | 3.60 | 5.1 | 94.9 | 0.0 | 0.08 | 1.19 | 0.82 | 0.84 | 2.05 | 8440 | 1052 | 16 | 0 | 20 | 0 | 0 | logfile |
✔ | 9BAZ | 44415 | 2025-02-12 | 2024-04-05 | 2.76 | 3.45 | 2.80 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 16.56 | 0.00 | 2.117 | 12.04 | 0.50 | 3.2 | 96.8 | 0.0 | 0.19 | 0.71 | 0.71 | 2.69 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 16.88 | 0.00 | 2.426 | 9.84 | 4.15 | 3.6 | 96.4 | 0.0 | 0.19 | 0.29 | 0.72 | 0.72 | 2.60 | 8283 | 1090 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 9BAZ | 44415 | 2024-10-10 | 2024-04-05 | 2.76 | 3.45 | 2.80 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 16.56 | 0.00 | 2.117 | 12.04 | 0.50 | 3.2 | 96.8 | 0.0 | 0.19 | 0.71 | 0.71 | 2.69 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.88 | 0.00 | 2.437 | 9.22 | 3.14 | 3.3 | 96.7 | 0.0 | 0.27 | 0.30 | 0.71 | 0.72 | 2.49 | 8283 | 1090 | 5 | 0 | 1 | 0 | 0 | logfile |