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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9ASD | 43813 | 2025-02-10 | 2024-02-25 | 3.3 | 3.51 | 3.27 | 3.6 | 0.011 | 1.51 | 4.0 | 0.09 | 11.03 | 0.02 | 2.348 | 2.18 | 1.35 | 4.4 | 95.6 | 0.0 | 0.14 | 0.67 | 0.76 | 4.80 | 3.5 | 0.004 | 0.75 | 0.0 | 0.05 | 13.66 | 0.00 | 2.603 | 4.36 | 1.79 | 3.7 | 96.1 | 0.2 | -0.01 | 1.18 | 0.70 | 0.82 | 4.04 | 3013 | 419 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9ASD | 43813 | 2025-01-13 | 2024-02-25 | 3.3 | 3.51 | 3.27 | 3.6 | 0.011 | 1.51 | 4.0 | 0.09 | 11.03 | 0.02 | 2.348 | 2.18 | 1.35 | 4.4 | 95.6 | 0.0 | 0.14 | 0.67 | 0.76 | 4.80 | 3.5 | 0.004 | 0.75 | 0.0 | 0.05 | 13.66 | 0.00 | 2.603 | 4.36 | 1.79 | 3.7 | 96.1 | 0.2 | -0.01 | 1.18 | 0.70 | 0.82 | 4.04 | 3013 | 419 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9ASD | 43813 | 2025-03-05 | 2024-02-25 | 3.3 | 3.51 | 3.26 | 3.6 | 0.011 | 1.51 | 4.0 | 0.09 | 11.03 | 0.02 | 2.348 | 2.18 | 1.35 | 4.4 | 95.6 | 0.0 | 0.14 | 0.67 | 0.76 | 4.80 | 3.5 | 0.006 | 0.77 | 0.0 | 0.05 | 13.70 | 0.00 | 2.606 | 5.27 | 1.35 | 4.6 | 95.1 | 0.2 | -0.23 | 1.18 | 0.71 | 0.82 | 4.50 | 3013 | 419 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8YFW | 39231 | 2024-11-15 | 2024-02-25 | 3.65 | 3.82 | 3.63 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.86 | 0.01 | 2.152 | 13.17 | 0.28 | 4.7 | 95.0 | 0.3 | 1.70 | 0.56 | 0.70 | 1.25 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 16.31 | 0.00 | 2.485 | 10.26 | 3.56 | 4.0 | 95.8 | 0.3 | 2.49 | 0.50 | 0.56 | 0.71 | 0.65 | 8419 | 1161 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFW | 39231 | 2025-05-11 | 2024-02-25 | 3.65 | 3.82 | 3.62 | 3.7 | 0.004 | 0.75 | 0.0 | 0.04 | 15.86 | 0.01 | 2.152 | 13.17 | 0.28 | 4.7 | 95.0 | 0.3 | 1.70 | 0.56 | 0.70 | 1.25 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.27 | 0.00 | 2.483 | 10.07 | 4.13 | 4.1 | 95.7 | 0.3 | 2.46 | 0.49 | 0.56 | 0.71 | 0.84 | 8419 | 1161 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFQ | 39226 | 2024-12-26 | 2024-02-25 | 3.3 | 3.73 | 3.09 | 3.1 | 0.002 | 0.53 | 0.0 | 0.04 | 15.91 | 0.00 | 2.087 | 5.50 | 0.13 | 3.1 | 96.9 | 0.0 | 0.79 | 0.82 | 0.76 | 2.09 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 16.77 | 0.00 | 2.043 | 6.46 | 0.94 | 3.2 | 96.8 | 0.1 | 1.11 | 0.56 | 0.88 | 0.90 | 2.34 | 42167 | 5032 | 23 | 88 | 9 | 0 | 0 | logfile |
✔ | 8YFW | 39231 | 2025-01-15 | 2024-02-25 | 3.65 | 3.82 | 3.63 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.86 | 0.01 | 2.152 | 13.17 | 0.28 | 4.7 | 95.0 | 0.3 | 1.70 | 0.56 | 0.70 | 1.25 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.25 | 0.00 | 2.489 | 10.13 | 3.13 | 3.7 | 96.0 | 0.3 | 2.70 | 1.19 | 0.56 | 0.71 | 0.98 | 8419 | 1161 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFW | 39231 | 2025-02-12 | 2024-02-25 | 3.65 | 3.82 | 3.63 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.86 | 0.01 | 2.152 | 13.17 | 0.28 | 4.7 | 95.0 | 0.3 | 1.70 | 0.56 | 0.70 | 1.25 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.25 | 0.00 | 2.489 | 10.13 | 3.13 | 3.7 | 96.0 | 0.3 | 2.70 | 1.19 | 0.56 | 0.71 | 0.98 | 8419 | 1161 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFW | 39231 | 2025-03-13 | 2024-02-25 | 3.65 | 3.82 | 3.62 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.86 | 0.01 | 2.152 | 13.17 | 0.28 | 4.7 | 95.0 | 0.3 | 1.70 | 0.56 | 0.70 | 1.25 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.33 | 0.00 | 2.479 | 10.32 | 3.13 | 4.0 | 95.8 | 0.3 | 2.45 | 0.49 | 0.56 | 0.71 | 0.86 | 8419 | 1161 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFW | 39231 | 2025-04-29 | 2024-02-25 | 3.65 | 3.82 | 3.62 | 3.7 | 0.004 | 0.75 | 0.0 | 0.04 | 15.86 | 0.01 | 2.152 | 13.17 | 0.28 | 4.7 | 95.0 | 0.3 | 1.70 | 0.56 | 0.70 | 1.25 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 16.29 | 0.00 | 2.485 | 10.95 | 3.13 | 4.2 | 95.5 | 0.3 | 2.62 | 0.45 | 0.56 | 0.71 | 0.81 | 8419 | 1161 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFW | 39231 | 2024-12-28 | 2024-02-25 | 3.65 | 3.82 | 3.63 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.86 | 0.01 | 2.152 | 13.17 | 0.28 | 4.7 | 95.0 | 0.3 | 1.70 | 0.56 | 0.70 | 1.25 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 16.31 | 0.00 | 2.485 | 10.26 | 3.56 | 4.0 | 95.8 | 0.3 | 2.49 | 0.50 | 0.56 | 0.71 | 0.65 | 8419 | 1161 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 9ASH | 43814 | 2025-01-24 | 2024-02-25 | 2.58 | 2.83 | 2.69 | 2.9 | 0.005 | 0.64 | 0.0 | 0.04 | 16.63 | 0.00 | 1.963 | 10.97 | 0.00 | 6.8 | 93.1 | 0.1 | -0.64 | 0.70 | 0.76 | 2.77 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 18.43 | 0.00 | 1.994 | 9.21 | 1.81 | 5.6 | 94.3 | 0.0 | -0.27 | 0.35 | 0.71 | 0.82 | 2.26 | 22309 | 2624 | 14 | 61 | 5 | 2 | 0 | logfile |
✔ | 9ASH | 43814 | 2025-05-21 | 2024-02-25 | 2.58 | 2.83 | 2.69 | 2.9 | 0.005 | 0.65 | 0.0 | 0.04 | 16.63 | 0.00 | 1.963 | 10.97 | 0.00 | 6.8 | 93.1 | 0.1 | -0.64 | 0.70 | 0.76 | 2.77 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 18.43 | 0.00 | 1.994 | 9.21 | 1.81 | 5.6 | 94.3 | 0.0 | -0.27 | 0.35 | 0.71 | 0.82 | 2.26 | 22309 | 2624 | 14 | 61 | 5 | 2 | 0 | logfile |
✔ | 9ASH | 43814 | 2024-09-29 | 2024-02-25 | 2.58 | 2.83 | 2.69 | 2.9 | 0.005 | 0.64 | 0.0 | 0.04 | 16.63 | 0.00 | 1.963 | 10.97 | 0.00 | 6.8 | 93.1 | 0.1 | -0.64 | 0.70 | 0.76 | 2.77 | 2.9 | 0.004 | 0.60 | 0.0 | 0.04 | 18.47 | 0.00 | 1.923 | 9.21 | 1.95 | 6.4 | 93.6 | 0.0 | -0.32 | 0.35 | 0.71 | 0.82 | 2.21 | 22309 | 2624 | 14 | 61 | 5 | 2 | 0 | logfile |
✔ | 8YFX | 39232 | 2025-02-11 | 2024-02-25 | 3.56 | 3.75 | 3.47 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 16.59 | 0.00 | 2.071 | 9.89 | 0.28 | 6.1 | 93.9 | 0.0 | 0.74 | 0.52 | 0.71 | 1.68 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 17.07 | 0.00 | 2.486 | 8.37 | 2.98 | 5.2 | 94.8 | 0.0 | 1.64 | 1.17 | 0.51 | 0.70 | 1.44 | 6588 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFX | 39232 | 2025-03-11 | 2024-02-25 | 3.56 | 3.75 | 3.46 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 16.59 | 0.00 | 2.071 | 9.89 | 0.28 | 6.1 | 93.9 | 0.0 | 0.74 | 0.52 | 0.71 | 1.68 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 16.95 | 0.00 | 2.485 | 8.14 | 2.84 | 5.1 | 94.9 | 0.0 | 1.63 | 1.17 | 0.51 | 0.70 | 1.42 | 6588 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFX | 39232 | 2025-04-27 | 2024-02-25 | 3.56 | 3.75 | 3.46 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 16.59 | 0.00 | 2.071 | 9.89 | 0.28 | 6.1 | 93.9 | 0.0 | 0.74 | 0.52 | 0.71 | 1.68 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 16.95 | 0.00 | 2.485 | 8.14 | 2.84 | 5.1 | 94.9 | 0.0 | 1.63 | 1.17 | 0.51 | 0.70 | 1.42 | 6588 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFX | 39232 | 2024-12-27 | 2024-02-25 | 3.56 | 3.75 | 3.47 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 16.59 | 0.00 | 2.071 | 9.89 | 0.28 | 6.1 | 93.9 | 0.0 | 0.74 | 0.52 | 0.71 | 1.68 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.95 | 0.00 | 2.485 | 8.45 | 1.85 | 5.2 | 94.8 | 0.0 | 1.59 | 1.17 | 0.51 | 0.70 | 1.55 | 6588 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFX | 39232 | 2025-01-14 | 2024-02-25 | 3.56 | 3.75 | 3.47 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 16.59 | 0.00 | 2.071 | 9.89 | 0.28 | 6.1 | 93.9 | 0.0 | 0.74 | 0.52 | 0.71 | 1.68 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 17.07 | 0.00 | 2.486 | 8.37 | 2.98 | 5.2 | 94.8 | 0.0 | 1.64 | 1.17 | 0.51 | 0.70 | 1.44 | 6588 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8YFX | 39232 | 2024-11-14 | 2024-02-25 | 3.56 | 3.75 | 3.47 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 16.59 | 0.00 | 2.071 | 9.89 | 0.28 | 6.1 | 93.9 | 0.0 | 0.74 | 0.52 | 0.71 | 1.68 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.95 | 0.00 | 2.485 | 8.45 | 1.85 | 5.2 | 94.8 | 0.0 | 1.59 | 1.17 | 0.51 | 0.70 | 1.55 | 6588 | 792 | 2 | 0 | 0 | 0 | 0 | logfile |