Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YBJ	39119	2025-05-14	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.04	28.40	0.01	2.583	3.08	1.91	0.5	99.5	0.0	2.67	0.26	0.76	0.84	3.83	11953	758	10	290	0	0	0	logfile
✔	8YBJ	39119	2024-08-04	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8YBK	39120	2024-11-16	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2024-12-29	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2024-09-25	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2025-04-30	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.005	0.59	0.0	0.04	27.84	0.00	2.533	4.63	1.72	2.0	98.0	0.0	2.71	1.11	0.78	0.83	2.81	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2025-01-16	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.57	0.0	0.03	27.80	0.00	2.539	4.85	2.41	1.6	98.4	0.0	2.87	1.11	0.79	0.83	2.65	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2025-02-14	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.57	0.0	0.03	27.80	0.00	2.539	4.85	2.41	1.6	98.4	0.0	2.87	1.11	0.79	0.83	2.65	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2024-10-11	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2025-05-13	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.57	0.0	0.03	27.80	0.00	2.539	4.85	2.41	1.6	98.4	0.0	2.87	1.11	0.79	0.83	2.65	10261	708	10	228	0	0	0	logfile
✔	8YBK	39120	2024-08-04	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8S0T	19628	2025-01-17	2024-02-14	2.3	2.16	2.46	2.3	0.013	2.14	4.0	0.14	16.21	0.02	2.480	4.30	3.24	3.6	95.8	0.6	-2.68	0.56	0.73	4.61	2.5	0.004	0.65	0.0	0.04	16.77	0.00	2.446	7.43	0.90	2.8	97.1	0.2	0.25	1.05	0.57	0.75	3.61	10665	630	7	0	1	145	5404	logfile
✔	8S0T	19628	2025-02-14	2024-02-14	2.3	2.16	2.46	2.3	0.013	2.14	4.0	0.14	16.21	0.02	2.480	4.30	3.24	3.6	95.8	0.6	-2.68	0.56	0.73	4.61	2.5	0.004	0.65	0.0	0.04	16.77	0.00	2.446	7.43	0.90	2.8	97.1	0.2	0.25	1.05	0.57	0.75	3.61	10665	630	7	0	1	145	5404	logfile
✔	8W12	43714	2025-05-27	2024-02-14	3.5	3.04	3.63	3.5	0.003	0.70	0.0	0.05	14.49	0.01	2.219	5.77	0.00	3.0	97.0	0.0	-0.33	0.84	0.82	1.93	3.3	0.004	0.84	2.0	0.05	16.65	0.00	1.945	10.08	2.85	3.1	96.9	0.0	0.18	0.52	0.85	0.83	1.78	29248	3628	6	0	0	0	0	logfile
✔	8W12	43714	2024-08-10	2024-02-14	3.5	3.04	3.63	3.5	0.003	0.70	0.0	0.05	14.49	0.01	2.219	5.77	0.00	3.0	97.0	0.0	-0.33	0.84	0.82	1.93	3.3	0.005	0.78	0.0	0.05	16.67	0.00	2.275	8.47	3.23	3.8	96.2	0.0	0.22	0.53	0.85	0.83	1.78	29248	3628	6	0	0	0	0	logfile
✔	8YBJ	39119	2024-12-29	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8YBJ	39119	2024-11-16	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✘	8W0P	43711	2025-01-22	2024-02-13	3.26	4.11	3.49	3.5	0.003	0.63	0.0	0.04	14.73	0.00	2.158	10.53	0.14	4.3	95.4	0.2	-0.11	0.82	0.70	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19116	2307	5	0	2	0	0	logfile
✘	8W0P	43711	2025-05-19	2024-02-13	3.26	4.11	3.49	3.5	0.003	0.63	0.0	0.04	14.73	0.00	2.158	10.53	0.14	4.3	95.4	0.2	-0.11	0.82	0.70	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19116	2307	5	0	2	0	0	logfile
✔	8W0P	43711	2024-11-19	2024-02-13	3.26	4.11	3.49	3.5	0.003	0.63	0.0	0.04	14.73	0.00	2.158	10.53	0.14	4.3	95.4	0.2	-0.11	0.82	0.70	2.15	3.6	0.003	0.54	0.0	0.04	15.43	0.00	2.390	7.39	0.62	4.6	95.3	0.2	0.75	0.40	0.89	0.85	1.71	19116	2307	5	0	2	0	0	logfile

• ← previous
• Page 336 of 5030
• next →