Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VYF	43659	2025-05-10	2024-02-08	3.2	3.37	3.21	3.4	0.011	1.29	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.004	0.62	0.0	0.05	12.31	0.00	2.565	2.54	2.12	2.7	97.3	0.0	0.64	0.53	0.67	0.87	4.98	5132	715	9	0	12	0	0	logfile
✔	8VYF	43659	2025-02-11	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.004	0.61	0.0	0.05	12.24	0.00	2.563	1.90	2.59	2.6	97.4	0.0	0.78	0.52	0.68	0.88	5.09	5132	715	9	0	12	0	0	logfile
✔	8VYF	43659	2025-03-06	2024-02-08	3.2	3.37	3.21	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.003	0.59	0.0	0.04	12.32	0.00	2.539	2.11	1.18	2.9	97.1	0.0	0.91	0.53	0.66	0.87	5.21	5132	715	9	0	12	0	0	logfile
✔	8VYF	43659	2025-01-14	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.004	0.61	0.0	0.05	12.24	0.00	2.563	1.90	2.59	2.6	97.4	0.0	0.78	0.52	0.68	0.88	5.09	5132	715	9	0	12	0	0	logfile
✔	8RXT	19579	2025-05-22	2024-02-07	3.93	4.22	3.85	3.9	0.008	0.92	0.0	0.04	16.93	0.01	2.188	8.29	0.62	6.3	93.0	0.7	-0.09	0.80	0.75	1.03	3.9	0.003	0.91	0.0	0.04	17.52	0.01	2.438	14.32	2.67	7.1	92.5	0.4	-0.38	1.06	0.80	0.80	1.05	22258	2891	9	0	4	0	0	logfile
✔	8Y9Z	39086	2025-05-13	2024-02-07	3.41	3.63	3.40	3.6	0.006	0.67	0.0	0.05	12.84	0.01	2.003	3.01	1.69	5.1	94.9	0.0	-1.93	0.68	0.82	2.13	3.6	0.003	0.63	0.0	0.04	15.16	0.00	1.797	5.30	1.44	5.3	94.7	0.0	0.76	2.48	0.67	0.82	1.77	11061	1388	6	0	3	0	0	logfile
✘	8YA2	39088	2025-05-15	2024-02-07	3.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12899	1624	8	0	4	0	0	logfile
✔	8RXT	19579	2025-01-24	2024-02-07	3.93	4.22	3.85	3.9	0.005	0.92	0.0	0.04	16.93	0.01	2.188	8.29	0.62	6.3	93.0	0.7	-0.09	0.80	0.75	1.03	3.9	0.003	0.91	0.0	0.04	17.52	0.01	2.438	14.32	2.67	7.1	92.5	0.4	-0.38	1.06	0.80	0.80	1.05	22258	2891	9	0	4	0	0	logfile
✔	8Y9Y	39085	2025-05-13	2024-02-07	3.29	3.20	3.22	3.3	0.017	1.13	1.0	0.07	16.62	0.01	1.632	7.09	0.73	6.5	93.5	0.0	-3.25	0.77	0.83	2.48	3.2	0.003	0.63	0.0	0.04	17.52	0.00	1.185	6.07	3.00	4.0	96.0	0.0	1.36	1.20	0.72	0.82	2.26	10207	1284	5	0	3	0	0	logfile
✔	8RXS	19578	2024-11-18	2024-02-07	2.8	3.57	2.87	3.4	0.003	0.61	0.0	0.04	16.04	0.00	2.088	9.16	0.45	6.6	93.1	0.3	-1.73	0.65	0.78	3.22	3.4	0.004	0.68	0.0	0.04	16.57	0.00	2.339	4.49	1.36	7.8	92.0	0.2	-0.34	2.16	0.65	0.82	3.56	16267	1080	6	0	0	0	8245	logfile
✔	8RXS	19578	2025-05-17	2024-02-07	2.8	3.57	2.87	3.4	0.003	0.61	0.0	0.04	16.04	0.00	2.088	9.16	0.45	6.6	93.1	0.3	-1.73	0.65	0.78	3.22	3.4	0.003	0.66	0.0	0.04	16.58	0.00	2.337	4.18	1.13	7.1	92.7	0.2	-0.38	2.16	0.64	0.82	3.53	16267	1080	6	0	0	0	8245	logfile
✔	8RXS	19578	2025-01-21	2024-02-07	2.8	3.57	2.87	3.4	0.003	0.61	0.0	0.04	16.04	0.00	2.088	9.16	0.45	6.6	93.1	0.3	-1.73	0.65	0.78	3.22	3.4	0.003	0.66	0.0	0.04	16.58	0.00	2.337	4.18	1.13	7.1	92.7	0.2	-0.38	2.16	0.64	0.82	3.53	16267	1080	6	0	0	0	8245	logfile
✔	8RXS	19578	2024-12-31	2024-02-07	2.8	3.57	2.87	3.4	0.003	0.61	0.0	0.04	16.04	0.00	2.088	9.16	0.45	6.6	93.1	0.3	-1.73	0.65	0.78	3.22	3.4	0.004	0.68	0.0	0.04	16.57	0.00	2.339	4.49	1.36	7.8	92.0	0.2	-0.34	2.16	0.65	0.82	3.56	16267	1080	6	0	0	0	8245	logfile
✔	8VYB	43655	2025-03-12	2024-02-07	3.37	3.91	3.30	3.7	0.008	1.05	0.0	0.07	15.54	0.01	2.344	0.00	0.00	5.4	94.6	0.0	-1.28	0.70	0.63	1.89	3.7	0.003	0.67	0.0	0.04	16.94	0.00	2.489	6.71	2.00	3.9	96.1	0.0	0.13	1.21	0.79	0.80	1.92	7249	920	2	0	0	0	0	logfile
✔	8VYB	43655	2025-04-28	2024-02-07	3.37	3.91	3.30	3.7	0.008	1.05	0.0	0.07	15.54	0.01	2.344	0.00	0.00	5.4	94.6	0.0	-1.28	0.70	0.63	1.89	3.7	0.003	0.67	0.0	0.04	16.94	0.00	2.489	6.71	2.00	3.9	96.1	0.0	0.13	1.21	0.79	0.80	1.92	7249	920	2	0	0	0	0	logfile
✔	8VYB	43655	2025-05-11	2024-02-07	3.37	3.91	3.30	3.7	0.008	1.05	0.0	0.07	15.54	0.01	2.344	0.00	0.00	5.4	94.6	0.0	-1.28	0.70	0.63	1.89	3.7	0.003	0.66	0.0	0.04	16.85	0.00	2.557	7.33	2.37	4.3	95.7	0.0	-0.01	1.19	0.79	0.80	2.09	7249	920	2	0	0	0	0	logfile
✔	8VY7	43647	2025-05-12	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.004	0.60	0.0	0.04	15.68	0.00	2.506	6.45	1.39	3.8	96.2	0.0	1.26	1.30	0.81	0.82	3.40	8811	1136	6	0	2	0	0	logfile
✔	8VY7	43647	2024-08-03	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.003	0.60	0.0	0.04	15.73	0.00	2.489	6.57	1.71	3.4	96.6	0.0	1.29	0.97	0.81	0.82	3.31	8811	1136	6	0	2	0	0	logfile
✔	8VY7	43647	2025-04-29	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.003	0.59	0.0	0.04	15.76	0.00	2.498	6.40	1.49	3.4	96.6	0.0	1.29	1.30	0.80	0.82	3.28	8811	1136	6	0	2	0	0	logfile
✔	8VY7	43647	2024-12-28	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.003	0.60	0.0	0.04	15.73	0.00	2.489	6.57	1.71	3.4	96.6	0.0	1.29	0.97	0.81	0.82	3.31	8811	1136	6	0	2	0	0	logfile

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