Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VSE	43497	2024-11-15	2024-01-23	3.8	4.42	3.88	4.0	0.002	0.51	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.69	0.0	0.05	13.18	0.00	2.474	12.17	1.94	5.0	95.0	0.0	0.08	1.52	0.83	0.76	1.14	8043	963	13	0	20	0	0	logfile
✔	8VSE	43497	2024-12-28	2024-01-23	3.8	4.42	3.88	4.0	0.002	0.51	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.69	0.0	0.05	13.18	0.00	2.474	12.17	1.94	5.0	95.0	0.0	0.08	1.52	0.83	0.76	1.14	8043	963	13	0	20	0	0	logfile
✔	8Y0Y	38823	2024-12-28	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.31	0.00	2.444	3.87	4.44	6.2	93.8	0.0	-0.92	1.20	0.66	0.77	3.11	5027	652	4	0	1	0	0	logfile
✔	8Y0Y	38823	2024-11-14	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.31	0.00	2.444	3.87	4.44	6.2	93.8	0.0	-0.92	1.20	0.66	0.77	3.11	5027	652	4	0	1	0	0	logfile
✔	8VSE	43497	2025-05-11	2024-01-23	3.8	4.42	3.87	4.0	0.002	0.56	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.74	0.0	0.05	13.45	0.00	2.465	11.41	1.48	4.2	95.8	0.0	-0.07	1.53	0.83	0.76	1.45	8043	963	13	0	20	0	0	logfile
✔	8VSE	43497	2025-04-28	2024-01-23	3.8	4.42	3.87	4.0	0.002	0.56	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.73	0.0	0.04	13.33	0.00	2.495	11.54	1.71	5.7	94.3	0.0	0.16	1.52	0.83	0.76	1.34	8043	963	13	0	20	0	0	logfile
✔	8VSE	43497	2025-03-12	2024-01-23	3.8	4.42	3.87	4.0	0.002	0.51	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.69	0.0	0.05	13.62	0.00	2.495	12.43	1.48	6.1	93.9	0.0	-0.24	1.53	0.84	0.77	1.28	8043	963	13	0	20	0	0	logfile
✔	8Y0Y	38823	2024-10-10	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.31	0.00	2.444	3.87	4.44	6.2	93.8	0.0	-0.92	1.20	0.66	0.77	3.11	5027	652	4	0	1	0	0	logfile
✔	8Y0Y	38823	2024-09-24	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.31	0.00	2.444	3.87	4.44	6.2	93.8	0.0	-0.92	1.20	0.66	0.77	3.11	5027	652	4	0	1	0	0	logfile
✔	8Y0Y	38823	2024-08-03	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.31	0.00	2.444	3.87	4.44	6.2	93.8	0.0	-0.92	1.20	0.66	0.77	3.11	5027	652	4	0	1	0	0	logfile
✔	8Y0Y	38823	2025-05-11	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.43	0.01	2.459	3.97	5.18	6.1	93.9	0.0	-0.91	1.20	0.66	0.77	3.30	5027	652	4	0	1	0	0	logfile
✔	8VSE	43497	2025-02-12	2024-01-23	3.8	4.42	3.88	4.0	0.002	0.51	0.0	0.04	9.30	0.00	2.297	8.67	1.48	4.5	95.5	0.0	1.15	0.78	0.67	0.85	4.0	0.003	0.66	0.0	0.05	13.31	0.00	2.492	11.98	1.14	4.7	95.3	0.0	0.23	1.51	0.83	0.76	1.34	8043	963	13	0	20	0	0	logfile
✔	8RRR	19462	2024-08-02	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.80	0.0	0.06	15.66	0.00	2.531	8.72	4.04	9.6	90.4	0.0	-4.36	1.53	0.41	0.78	4.92	4925	735	10	0	0	0	0	logfile
✔	8RRR	19462	2024-10-09	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.80	0.0	0.06	15.66	0.00	2.531	8.72	4.04	9.6	90.4	0.0	-4.36	1.53	0.41	0.78	4.92	4925	735	10	0	0	0	0	logfile
✔	8RRR	19462	2024-11-14	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.80	0.0	0.06	15.66	0.00	2.531	8.72	4.04	9.6	90.4	0.0	-4.36	1.53	0.41	0.78	4.92	4925	735	10	0	0	0	0	logfile
✔	8RRR	19462	2024-12-27	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.80	0.0	0.06	15.66	0.00	2.531	8.72	4.04	9.6	90.4	0.0	-4.36	1.53	0.41	0.78	4.92	4925	735	10	0	0	0	0	logfile
✔	8RRR	19462	2025-01-14	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.003	0.69	0.0	0.05	15.44	0.00	2.516	6.52	2.98	5.8	94.2	0.0	-4.04	1.53	0.40	0.77	4.98	4925	735	10	0	0	0	0	logfile
✔	8RRR	19462	2025-02-11	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.003	0.69	0.0	0.05	15.44	0.00	2.516	6.52	2.98	5.8	94.2	0.0	-4.04	1.53	0.40	0.77	4.98	4925	735	10	0	0	0	0	logfile
✔	8RRR	19462	2025-03-06	2024-01-23	3.4	3.47	2.27	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.78	0.0	0.06	15.57	0.00	2.518	8.42	2.98	8.3	91.7	0.0	-4.31	1.53	0.40	0.78	4.79	4925	735	10	0	0	0	0	logfile
✔	8RRR	19462	2025-04-27	2024-01-23	3.4	3.47	2.27	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.78	0.0	0.06	15.57	0.00	2.518	8.42	2.98	8.3	91.7	0.0	-4.31	1.53	0.40	0.78	4.79	4925	735	10	0	0	0	0	logfile

• ← previous
• Page 387 of 5030
• next →