Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YHo	39290	2025-04-27	2024-02-28	2.8	3.60	2.94	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.85	0.0	0.04	15.06	0.00	2.552	11.74	1.97	7.1	92.9	0.0	-0.42	1.34	0.76	0.79	2.28	6206	759	3	0	0	0	0	logfile
✔	8YHo	39290	2025-06-05	2024-02-28	2.8	3.60	2.94	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.85	0.0	0.04	15.06	0.00	2.552	11.74	1.97	7.1	92.9	0.0	-0.42	1.34	0.76	0.79	2.28	6206	759	3	0	0	0	0	logfile
✔	8YHo	39290	2025-02-11	2024-02-28	2.8	3.60	2.93	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.83	0.0	0.04	15.18	0.00	2.490	11.58	2.12	7.1	92.9	0.0	-0.35	1.34	0.75	0.79	2.10	6206	759	3	0	0	0	0	logfile
✔	8YGU	39264	2025-03-05	2024-02-27	3.13	2.22	3.06	2.0	0.006	0.92	0.0	0.06	8.81	0.01	2.179	1.51	0.00	5.9	94.1	0.0	-3.27	0.58	0.78	4.48	2.1	0.004	0.65	0.0	0.04	13.55	0.00	2.419	3.30	4.16	6.3	93.7	0.0	-0.96	1.25	0.60	0.81	3.97	3693	474	5	0	0	0	0	logfile
✔	8YH8	39284	2025-06-21	2024-02-27	2.7	3.19	2.81	3.0	0.009	1.31	21.0	0.08	16.53	0.01	0.393	12.19	3.63	4.0	94.7	1.3	-0.33	0.83	0.84	2.47	3.0	0.003	0.66	0.0	0.04	16.49	0.00	1.148	4.79	1.57	3.0	96.9	0.1	1.14	1.20	0.83	0.92	3.39	24712	3205	11	0	6	0	0	logfile
✔	8YGU	39264	2025-04-26	2024-02-27	3.13	2.22	3.06	2.0	0.006	0.92	0.0	0.06	8.81	0.01	2.179	1.51	0.00	5.9	94.1	0.0	-3.27	0.58	0.78	4.48	2.1	0.003	0.61	0.0	0.04	13.46	0.00	2.409	3.03	3.42	5.7	94.3	0.0	-0.97	1.25	0.60	0.81	3.97	3693	474	5	0	0	0	0	logfile
✔	8YH9	39285	2025-01-23	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.004	0.67	0.0	0.04	20.62	0.00	2.455	12.36	6.06	8.7	91.3	0.0	-2.44	0.93	0.67	0.73	1.07	21153	2450	10	60	0	0	0	logfile
✔	8YH9	39285	2025-05-21	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.004	0.67	0.0	0.04	20.62	0.00	2.455	12.36	6.06	8.7	91.3	0.0	-2.44	0.93	0.67	0.73	1.07	21153	2450	10	60	0	0	0	logfile
✔	8YH9	39285	2025-06-18	2024-02-27	3.35	3.60	3.50	3.6	0.004	0.76	0.0	0.05	20.73	0.01	2.260	7.92	1.65	8.3	91.7	0.0	-2.96	0.66	0.65	1.07	3.6	0.004	0.66	0.0	0.04	20.65	0.00	2.433	12.36	6.70	8.9	91.1	0.0	-2.30	0.35	0.67	0.73	1.11	21153	2450	10	60	0	0	0	logfile
✔	8YHA	39286	2025-06-24	2024-02-27	3.4	3.38	3.35	3.3	0.003	0.62	0.0	0.04	20.62	0.00	1.865	6.67	0.54	6.1	93.9	0.0	-0.99	0.82	0.84	2.19	3.3	0.007	0.71	0.0	0.05	20.59	0.00	2.385	7.27	4.32	8.6	91.4	0.0	-0.69	0.30	0.83	0.87	2.44	28503	3333	14	108	2	0	0	logfile
✔	8YHA	39286	2025-05-26	2024-02-27	3.4	3.38	3.35	3.3	0.003	0.62	0.0	0.04	20.62	0.00	1.865	6.67	0.54	6.1	93.9	0.0	-0.99	0.82	0.84	2.19	3.3	0.006	0.66	0.0	0.04	20.57	0.00	2.387	7.36	3.53	8.0	92.0	0.0	-0.50	0.28	0.83	0.86	2.46	28503	3333	14	108	2	0	0	logfile
✔	8YH5	39281	2024-11-15	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.003	0.85	0.0	0.05	16.47	0.00	2.347	13.71	2.94	4.7	95.2	0.1	-0.25	1.15	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-05-12	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.85	0.0	0.05	16.46	0.00	2.379	14.05	3.04	5.2	94.7	0.1	-0.29	1.17	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-04-29	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.86	0.0	0.05	16.28	0.00	2.510	13.36	2.94	4.4	95.5	0.1	-0.17	1.16	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-03-13	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.85	0.0	0.05	16.38	0.00	2.411	13.82	3.88	4.8	95.1	0.1	-0.38	1.15	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-02-13	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	1.09	0.0	0.05	16.27	0.00	1.852	15.78	2.94	4.5	95.4	0.1	-0.18	1.16	0.64	0.66	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-01-15	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	1.09	0.0	0.05	16.27	0.00	1.852	15.78	2.94	4.5	95.4	0.1	-0.18	1.16	0.64	0.66	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-06-07	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.52	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.83	0.0	0.05	16.40	0.00	2.411	14.22	3.15	5.5	94.4	0.1	-0.11	1.16	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2024-12-28	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.003	0.85	0.0	0.05	16.47	0.00	2.347	13.71	2.94	4.7	95.2	0.1	-0.25	1.15	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YH3	39280	2025-03-13	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.83	0.0	0.05	16.20	0.00	2.419	14.40	2.10	4.8	95.2	0.0	0.17	1.86	0.67	0.74	0.88	8691	1103	6	0	1	0	0	logfile

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