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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8RMR | 19368 | 2025-01-22 | 2024-01-08 | 3.25 | 3.58 | 3.47 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 17.46 | 0.00 | 1.921 | 8.89 | 0.26 | 4.2 | 95.7 | 0.1 | 0.21 | 0.65 | 0.62 | 0.85 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 17.96 | 0.00 | 1.858 | 6.82 | 2.37 | 4.7 | 95.2 | 0.1 | -0.08 | 1.25 | 0.67 | 0.70 | 1.12 | 68466 | 4273 | 8 | 0 | 1 | 0 | 34252 | logfile |
✔ | 8RMR | 19368 | 2024-09-28 | 2024-01-08 | 3.25 | 3.58 | 3.47 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 17.46 | 0.00 | 1.921 | 8.89 | 0.26 | 4.2 | 95.7 | 0.1 | 0.21 | 0.65 | 0.62 | 0.85 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 18.00 | 0.00 | 1.875 | 6.43 | 2.16 | 4.5 | 95.4 | 0.1 | 0.02 | 1.26 | 0.67 | 0.70 | 1.13 | 68466 | 4273 | 8 | 0 | 1 | 0 | 34252 | logfile |
✔ | 8RMR | 19368 | 2024-10-14 | 2024-01-08 | 3.25 | 3.58 | 3.47 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 17.46 | 0.00 | 1.921 | 8.89 | 0.26 | 4.2 | 95.7 | 0.1 | 0.21 | 0.65 | 0.62 | 0.85 | 3.5 | 0.004 | 0.73 | 1.0 | 0.04 | 18.11 | 0.00 | 1.730 | 9.25 | 2.82 | 5.1 | 94.9 | 0.1 | -0.46 | 1.26 | 0.67 | 0.70 | 1.19 | 68466 | 4273 | 8 | 0 | 1 | 0 | 34252 | logfile |
✔ | 8RMS | 19369 | 2025-05-29 | 2024-01-08 | 3.21 | 3.49 | 3.37 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 17.53 | 0.00 | 1.943 | 8.63 | 0.22 | 3.6 | 96.4 | 0.0 | 0.13 | 0.65 | 0.69 | 1.52 | 3.4 | 0.004 | 0.59 | 0.0 | 0.04 | 18.13 | 0.00 | 1.793 | 6.04 | 2.29 | 5.8 | 94.2 | 0.0 | -0.26 | 0.99 | 0.65 | 0.72 | 1.46 | 32434 | 2019 | 4 | 0 | 1 | 0 | 16245 | logfile |
✔ | 8RMQ | 19367 | 2025-05-25 | 2024-01-08 | 2.54 | 2.68 | 2.56 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 18.32 | 0.00 | 1.888 | 4.58 | 2.65 | 2.6 | 97.4 | 0.0 | 0.93 | 0.65 | 0.85 | 3.59 | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 18.31 | 0.00 | 2.049 | 3.15 | 1.46 | 2.9 | 97.0 | 0.1 | 0.83 | 0.29 | 0.66 | 0.86 | 3.69 | 27317 | 1698 | 6 | 0 | 2 | 7 | 13647 | logfile |
✔ | 8RMP | 19366 | 2025-05-26 | 2024-01-08 | 2.77 | 3.03 | 2.91 | 3.1 | 0.003 | 0.51 | 0.0 | 0.04 | 18.56 | 0.00 | 1.939 | 4.49 | 2.95 | 2.9 | 97.0 | 0.1 | 1.18 | 0.59 | 0.82 | 2.73 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 18.62 | 0.00 | 1.971 | 3.11 | 2.62 | 3.5 | 96.5 | 0.0 | 0.99 | 0.34 | 0.60 | 0.83 | 2.77 | 27631 | 1717 | 4 | 0 | 1 | 0 | 13813 | logfile |
✔ | 8VK3 | 43299 | 2024-02-28 | 2024-01-08 | 3.21 | 3.09 | — | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 14.00 | 0.00 | 1.591 | 6.88 | 0.05 | 2.2 | 97.8 | 0.0 | 1.48 | 0.87 | 0.86 | 3.39 | 3.0 | 0.005 | 0.67 | 0.0 | 0.04 | 15.59 | 0.00 | 2.072 | 8.57 | 1.16 | 2.5 | 97.5 | 0.0 | 1.46 | 0.96 | 0.90 | 0.90 | 3.32 | 148852 | 18672 | 20 | 0 | 12 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2024-09-24 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.40 | 0.01 | 2.531 | 4.53 | 0.89 | 5.0 | 94.9 | 0.1 | 1.46 | 0.42 | 0.69 | 0.84 | 1.72 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2024-08-03 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.40 | 0.01 | 2.531 | 4.53 | 0.89 | 5.0 | 94.9 | 0.1 | 1.46 | 0.42 | 0.69 | 0.84 | 1.72 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2025-05-12 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 15.23 | 0.01 | 2.516 | 5.45 | 1.11 | 5.1 | 94.9 | 0.1 | 1.31 | 0.40 | 0.69 | 0.85 | 1.86 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2024-11-15 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.40 | 0.01 | 2.531 | 4.53 | 0.89 | 5.0 | 94.9 | 0.1 | 1.46 | 0.42 | 0.69 | 0.84 | 1.72 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2025-04-29 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.26 | 0.01 | 2.545 | 5.10 | 0.89 | 4.9 | 95.0 | 0.1 | 1.37 | 0.41 | 0.69 | 0.85 | 1.63 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2025-03-13 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.26 | 0.01 | 2.545 | 5.10 | 0.89 | 4.9 | 95.0 | 0.1 | 1.37 | 0.41 | 0.69 | 0.85 | 1.63 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2025-01-15 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 15.23 | 0.01 | 2.516 | 5.45 | 1.11 | 5.1 | 94.9 | 0.1 | 1.31 | 0.40 | 0.69 | 0.85 | 1.86 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2024-12-28 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.40 | 0.01 | 2.531 | 4.53 | 0.89 | 5.0 | 94.9 | 0.1 | 1.46 | 0.42 | 0.69 | 0.84 | 1.72 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS5 | 38615 | 2024-10-10 | 2024-01-08 | 3.33 | 3.40 | 3.21 | 3.3 | 0.011 | 0.88 | 0.0 | 0.05 | 13.49 | 0.01 | 2.081 | 9.41 | 0.00 | 6.7 | 93.2 | 0.1 | -0.34 | 0.70 | 0.85 | 2.61 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.40 | 0.01 | 2.531 | 4.53 | 0.89 | 5.0 | 94.9 | 0.1 | 1.46 | 0.42 | 0.69 | 0.84 | 1.72 | 8705 | 1088 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8RML | 19363 | 2025-01-26 | 2024-01-08 | 3.84 | 4.20 | 4.01 | 4.1 | 0.004 | 0.60 | 0.0 | 0.04 | 14.77 | 0.00 | 2.198 | 12.94 | 0.46 | 3.7 | 96.3 | 0.0 | 0.77 | 0.65 | 0.79 | 1.28 | 4.0 | 0.002 | 0.63 | 0.0 | 0.04 | 15.68 | 0.00 | 2.406 | 7.55 | 2.47 | 3.0 | 97.0 | 0.0 | 1.98 | 1.38 | 0.64 | 0.77 | 1.01 | 24454 | 3088 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS0 | 38612 | 2025-05-13 | 2024-01-08 | 3.89 | 4.15 | 4.00 | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 12.99 | 0.01 | 2.158 | 13.17 | 0.00 | 13.6 | 86.3 | 0.1 | -0.93 | 0.67 | 0.80 | 2.30 | 4.0 | 0.003 | 0.80 | 0.0 | 0.04 | 15.43 | 0.00 | 2.430 | 9.35 | 3.25 | 10.9 | 89.0 | 0.1 | -0.16 | 0.53 | 0.68 | 0.79 | 1.65 | 10353 | 1388 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS0 | 38612 | 2025-02-14 | 2024-01-08 | 3.89 | 4.15 | 4.00 | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 12.99 | 0.01 | 2.158 | 13.17 | 0.00 | 13.6 | 86.3 | 0.1 | -0.93 | 0.67 | 0.80 | 2.30 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 15.35 | 0.01 | 2.425 | 9.16 | 3.35 | 10.6 | 89.3 | 0.1 | -0.12 | 0.54 | 0.68 | 0.79 | 1.53 | 10353 | 1388 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XS0 | 38612 | 2025-01-17 | 2024-01-08 | 3.89 | 4.15 | 4.00 | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 12.99 | 0.01 | 2.158 | 13.17 | 0.00 | 13.6 | 86.3 | 0.1 | -0.93 | 0.67 | 0.80 | 2.30 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 15.35 | 0.01 | 2.425 | 9.16 | 3.35 | 10.6 | 89.3 | 0.1 | -0.12 | 0.54 | 0.68 | 0.79 | 1.53 | 10353 | 1388 | 2 | 0 | 0 | 0 | 0 | logfile |