Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VJM	43289	2025-05-10	2024-01-07	4.0	4.19	4.04	4.2	0.008	0.82	0.0	0.04	22.67	0.01	2.235	8.60	0.29	6.0	93.8	0.2	0.48	0.66	0.82	—	4.1	0.003	0.72	0.0	0.04	17.67	0.00	2.431	10.08	3.10	6.8	93.1	0.1	0.56	0.97	0.67	0.83	—	6667	808	5	0	3	0	0	logfile
✔	8VJM	43289	2025-04-27	2024-01-07	4.0	4.19	4.04	4.2	0.008	0.82	0.0	0.04	22.67	0.01	2.235	8.60	0.29	6.0	93.8	0.2	0.48	0.66	0.82	—	4.1	0.004	0.74	0.0	0.04	17.54	0.00	2.425	10.37	3.24	7.4	92.5	0.1	0.44	0.98	0.67	0.84	—	6667	808	5	0	3	0	0	logfile
✔	8VJM	43289	2025-03-11	2024-01-07	4.0	4.19	4.04	4.2	0.008	0.82	0.0	0.04	22.67	0.01	2.235	8.60	0.29	6.0	93.8	0.2	0.48	0.66	0.82	—	4.1	0.004	0.74	0.0	0.04	17.54	0.00	2.425	10.37	3.24	7.4	92.5	0.1	0.44	0.98	0.67	0.84	—	6667	808	5	0	3	0	0	logfile
✔	8VJM	43289	2025-02-11	2024-01-07	4.0	4.19	4.05	4.2	0.008	0.82	0.0	0.04	22.67	0.01	2.235	8.60	0.29	6.0	93.8	0.2	0.48	0.66	0.82	—	4.2	0.003	0.72	0.0	0.04	17.67	0.00	2.431	10.08	3.10	6.8	93.1	0.1	0.56	0.97	0.67	0.83	—	6667	808	5	0	3	0	0	logfile
✔	8VJM	43289	2025-01-14	2024-01-07	4.0	4.19	4.05	4.2	0.008	0.82	0.0	0.04	22.67	0.01	2.235	8.60	0.29	6.0	93.8	0.2	0.48	0.66	0.82	—	4.2	0.003	0.72	0.0	0.04	17.67	0.00	2.431	10.08	3.10	6.8	93.1	0.1	0.56	0.97	0.67	0.83	—	6667	808	5	0	3	0	0	logfile
✔	8XRP	38609	2024-08-10	2024-01-07	3.75	3.96	3.76	3.9	0.013	1.59	21.0	0.11	13.23	0.00	2.120	10.56	1.92	3.7	96.3	0.0	0.65	0.76	0.73	1.74	3.9	0.003	0.60	0.0	0.04	14.22	0.00	2.439	6.76	1.71	2.9	97.1	0.0	0.58	0.85	0.80	0.81	1.76	28740	3560	24	0	24	0	0	logfile
✔	8XRP	38609	2025-05-26	2024-01-07	3.75	3.96	3.76	3.9	0.013	1.63	21.0	0.11	13.23	0.00	2.120	10.56	1.92	3.7	96.3	0.0	0.65	0.76	0.73	1.74	3.9	0.003	0.61	0.0	0.04	14.27	0.00	2.429	6.67	2.17	2.6	97.4	0.0	0.51	0.87	0.80	0.82	1.85	28740	3560	24	0	24	0	0	logfile
✔	8VJK	43284	2024-02-23	2024-01-07	2.92	3.34	3.08	3.0	0.003	0.69	0.0	0.04	14.13	0.00	1.955	5.07	0.05	1.9	98.1	0.0	2.22	0.89	0.89	3.55	3.0	0.007	0.62	0.0	0.04	15.40	0.00	2.060	6.04	0.80	2.1	97.9	0.0	1.90	0.35	0.91	0.93	3.60	143248	17920	12	0	28	0	0	logfile
✔	8VJC	43280	2024-08-06	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.005	0.68	0.0	0.05	16.21	0.00	2.429	11.55	2.75	8.5	91.3	0.2	-1.58	0.36	0.85	0.82	1.85	13927	1726	5	0	0	0	0	logfile
✔	8VJC	43280	2025-05-18	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.006	0.75	0.0	0.05	16.31	0.00	2.426	12.93	2.56	9.5	90.3	0.2	-1.80	0.37	0.85	0.82	1.79	13927	1726	5	0	0	0	0	logfile
✔	8VJC	43280	2025-01-21	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.004	0.67	0.0	0.05	16.25	0.00	2.423	10.93	2.43	8.3	91.5	0.2	-1.61	0.37	0.85	0.82	1.76	13927	1726	5	0	0	0	0	logfile
✔	8VJC	43280	2024-09-27	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.005	0.68	0.0	0.05	16.21	0.00	2.429	11.55	2.75	8.5	91.3	0.2	-1.58	0.36	0.85	0.82	1.85	13927	1726	5	0	0	0	0	logfile
✔	8VJB	43279	2024-08-06	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.003	0.62	0.0	0.04	17.21	0.00	2.406	10.10	2.97	6.6	93.3	0.1	-1.53	1.58	0.88	0.84	2.18	14688	1824	6	0	0	0	0	logfile
✔	8VJC	43280	2024-10-14	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.005	0.68	0.0	0.05	16.21	0.00	2.429	11.55	2.75	8.5	91.3	0.2	-1.58	0.36	0.85	0.82	1.85	13927	1726	5	0	0	0	0	logfile
✔	8VJC	43280	2024-11-18	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.005	0.68	0.0	0.05	16.21	0.00	2.429	11.55	2.75	8.5	91.3	0.2	-1.58	0.36	0.85	0.82	1.85	13927	1726	5	0	0	0	0	logfile
✔	8VJB	43279	2025-05-18	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.003	0.62	0.0	0.04	17.23	0.00	2.538	9.79	3.27	6.5	93.4	0.1	-1.58	1.59	0.88	0.84	2.11	14688	1824	6	0	0	0	0	logfile
✔	8VJB	43279	2025-01-22	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.004	0.63	0.0	0.04	17.24	0.00	2.526	10.79	2.73	7.1	92.8	0.1	-1.53	1.58	0.88	0.84	2.07	14688	1824	6	0	0	0	0	logfile
✔	8VJB	43279	2024-09-28	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.003	0.62	0.0	0.04	17.21	0.00	2.406	10.10	2.97	6.6	93.3	0.1	-1.53	1.58	0.88	0.84	2.18	14688	1824	6	0	0	0	0	logfile
✔	8VJB	43279	2024-10-14	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.003	0.62	0.0	0.04	17.21	0.00	2.406	10.10	2.97	6.6	93.3	0.1	-1.53	1.58	0.88	0.84	2.18	14688	1824	6	0	0	0	0	logfile
✔	8VJB	43279	2024-11-18	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.003	0.62	0.0	0.04	17.21	0.00	2.406	10.10	2.97	6.6	93.3	0.1	-1.53	1.58	0.88	0.84	2.18	14688	1824	6	0	0	0	0	logfile

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