Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Vi2	43246	2024-12-28	2024-01-03	3.1	3.54	3.18	3.5	0.003	0.48	0.0	0.04	12.42	0.00	2.029	6.59	0.00	3.7	96.3	0.0	0.67	0.62	0.86	5.04	3.5	0.004	0.55	0.0	0.04	13.71	0.00	2.609	4.64	0.52	2.8	97.2	0.0	3.30	0.65	0.59	0.87	4.43	7382	924	3	0	0	0	0	logfile
✔	8Vi2	43246	2024-11-14	2024-01-03	3.1	3.54	3.18	3.5	0.003	0.48	0.0	0.04	12.42	0.00	2.029	6.59	0.00	3.7	96.3	0.0	0.67	0.62	0.86	5.04	3.5	0.004	0.55	0.0	0.04	13.71	0.00	2.609	4.64	0.52	2.8	97.2	0.0	3.30	0.65	0.59	0.87	4.43	7382	924	3	0	0	0	0	logfile
✔	8XoR	38538	2025-01-17	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.68	0.0	0.04	14.58	0.00	2.468	5.19	1.30	2.8	97.2	0.0	1.22	1.65	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8XoR	38538	2024-12-29	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.69	0.0	0.04	14.54	0.00	2.480	6.14	1.41	2.4	97.6	0.0	1.31	1.66	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8XoR	38538	2024-11-16	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.69	0.0	0.04	14.54	0.00	2.480	6.14	1.41	2.4	97.6	0.0	1.31	1.66	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8XoR	38538	2024-10-11	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.69	0.0	0.04	14.54	0.00	2.480	6.14	1.41	2.4	97.6	0.0	1.31	1.66	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8XoR	38538	2024-09-25	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.69	0.0	0.04	14.54	0.00	2.480	6.14	1.41	2.4	97.6	0.0	1.31	1.66	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8XoR	38538	2025-05-13	2024-01-02	3.0	3.68	2.91	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.68	0.0	0.04	14.58	0.00	2.468	5.19	1.30	2.8	97.2	0.0	1.22	1.65	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8XoR	38538	2025-02-14	2024-01-02	3.0	3.68	2.90	3.3	0.005	0.90	0.0	0.06	14.20	0.01	2.242	5.41	0.33	4.3	95.7	0.0	-0.55	0.72	0.83	3.69	3.3	0.003	0.68	0.0	0.04	14.58	0.00	2.468	5.19	1.30	2.8	97.2	0.0	1.22	1.65	0.72	0.84	2.55	8979	1160	6	0	6	0	0	logfile
✔	8RLE	19340	2025-05-10	2024-01-02	3.75	3.00	3.78	3.9	0.003	0.56	0.0	0.04	13.17	0.00	2.286	7.87	0.00	1.6	98.4	0.0	0.41	0.59	0.59	0.77	3.9	0.004	0.67	0.0	0.05	15.39	0.01	2.083	12.41	2.54	6.3	93.7	0.0	-0.65	0.82	0.63	0.65	1.26	6618	450	3	0	0	0	3190	logfile
✔	8XP3	38549	2025-01-26	2024-01-02	3.4	3.62	3.54	3.1	0.004	0.83	1.0	0.05	21.84	0.01	2.083	6.55	0.25	4.4	95.5	0.1	-2.36	0.81	0.82	1.85	3.1	0.004	0.68	0.0	0.04	22.27	0.01	1.992	11.28	2.66	4.5	95.4	0.1	-0.33	0.74	0.82	0.87	1.67	80435	5469	41	1740	4	0	0	logfile
✔	8RL8	19334	2025-04-27	2024-01-02	2.79	2.21	2.86	2.9	0.003	0.59	0.0	0.04	12.36	0.00	2.172	7.53	0.00	1.2	98.8	0.0	1.43	0.65	0.72	2.63	2.8	0.004	0.57	0.0	0.04	15.29	0.00	2.431	7.84	2.41	1.4	98.6	0.0	2.48	1.02	0.67	0.74	3.17	6469	421	2	0	1	0	3252	logfile
✔	8RL8	19334	2025-05-10	2024-01-02	2.79	2.21	2.86	2.9	0.003	0.59	0.0	0.04	12.36	0.00	2.172	7.53	0.00	1.2	98.8	0.0	1.43	0.65	0.72	2.63	2.8	0.004	0.57	0.0	0.04	15.23	0.00	2.429	7.68	3.01	1.4	98.6	0.0	2.49	1.02	0.67	0.74	3.17	6469	421	2	0	1	0	3252	logfile
✔	8RLD	19339	2025-04-27	2024-01-02	2.84	2.96	2.86	3.1	0.003	0.59	0.0	0.04	12.39	0.00	1.981	7.12	0.00	1.2	98.8	0.0	1.29	0.45	0.58	1.50	3.0	0.004	0.58	0.0	0.04	15.43	0.00	2.337	7.43	2.13	3.4	96.6	0.0	1.32	0.70	0.50	0.64	2.35	6416	422	2	0	1	0	3209	logfile
✔	8RLD	19339	2025-03-11	2024-01-02	2.84	2.96	2.86	3.1	0.003	0.59	0.0	0.04	12.39	0.00	1.981	7.12	0.00	1.2	98.8	0.0	1.29	0.45	0.58	1.50	3.0	0.004	0.58	0.0	0.04	15.43	0.00	2.337	7.43	2.13	3.4	96.6	0.0	1.32	0.70	0.50	0.64	2.35	6416	422	2	0	1	0	3209	logfile
✘	8RLA	19336	2025-04-29	2024-01-02	3.03	2.57	3.09	3.1	0.002	0.54	0.0	0.04	13.05	0.00	2.009	10.36	0.00	2.0	98.0	0.0	0.42	0.73	0.71	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8304	560	3	0	1	0	4091	logfile
✔	8RLE	19340	2025-02-11	2024-01-02	3.75	3.00	3.79	3.9	0.003	0.56	0.0	0.04	13.17	0.00	2.286	7.87	0.00	1.6	98.4	0.0	0.41	0.59	0.59	0.77	3.9	0.004	1.25	0.0	0.04	15.48	0.00	2.253	12.10	1.13	4.5	95.5	0.0	0.03	0.75	0.62	0.64	0.82	6618	450	3	0	0	0	3190	logfile
✔	8RLD	19339	2025-05-10	2024-01-02	2.84	2.96	2.86	3.1	0.003	0.59	0.0	0.04	12.39	0.00	1.981	7.12	0.00	1.2	98.8	0.0	1.29	0.45	0.58	1.50	3.0	0.004	0.60	0.0	0.04	15.26	0.01	2.345	7.59	0.91	3.1	96.9	0.0	1.51	0.68	0.49	0.63	2.23	6416	422	2	0	1	0	3209	logfile
✔	8RLD	19339	2025-02-11	2024-01-02	2.84	2.96	2.86	3.1	0.003	0.59	0.0	0.04	12.39	0.00	1.981	7.12	0.00	1.2	98.8	0.0	1.29	0.45	0.58	1.50	3.0	0.004	0.60	0.0	0.04	15.26	0.01	2.345	7.59	0.91	3.1	96.9	0.0	1.51	0.68	0.49	0.63	2.23	6416	422	2	0	1	0	3209	logfile
✔	8RLE	19340	2025-03-11	2024-01-02	3.75	3.00	3.78	3.9	0.003	0.56	0.0	0.04	13.17	0.00	2.286	7.87	0.00	1.6	98.4	0.0	0.41	0.59	0.59	0.77	3.9	0.004	0.66	0.0	0.04	15.31	0.00	2.122	11.20	1.98	6.1	93.9	0.0	-0.15	0.78	0.62	0.65	1.16	6618	450	3	0	0	0	3190	logfile

• ← previous
• Page 441 of 5030
• next →