Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AXC	43932	2024-12-28	2024-03-06	4.16	3.88	4.03	3.8	0.005	1.00	0.0	0.06	13.78	0.01	2.243	5.98	0.21	4.2	95.6	0.2	-1.06	0.72	0.77	—	3.8	0.003	0.69	0.0	0.05	13.94	0.00	2.360	9.78	0.00	4.0	95.8	0.2	0.33	0.65	0.73	0.79	—	8677	1079	6	0	2	0	0	logfile
✔	8YLP	39388	2025-07-25	2024-03-06	2.9	2.96	2.87	3.0	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.62	0.80	2.92	2.9	0.003	0.71	0.0	0.04	15.52	0.00	2.464	5.18	1.92	8.2	91.7	0.1	0.92	0.50	0.66	0.85	2.22	7397	936	7	0	8	0	0	logfile
✔	8YLP	39388	2025-06-06	2024-03-06	2.9	2.96	2.87	3.0	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.62	0.80	2.92	2.9	0.003	0.71	0.0	0.04	15.52	0.00	2.464	5.18	1.92	8.2	91.7	0.1	0.92	0.50	0.66	0.85	2.22	7397	936	7	0	8	0	0	logfile
✔	8YLP	39388	2025-05-11	2024-03-06	2.9	2.96	2.87	3.0	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.62	0.80	2.92	3.0	0.003	0.67	0.0	0.04	15.49	0.00	2.478	4.84	1.66	7.8	92.1	0.1	1.09	0.51	0.67	0.84	2.07	7397	936	7	0	8	0	0	logfile
✔	8YLP	39388	2025-04-28	2024-03-06	2.9	2.96	2.87	3.0	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.62	0.80	2.92	2.9	0.003	0.71	0.0	0.04	15.52	0.00	2.464	5.18	1.92	8.2	91.7	0.1	0.92	0.50	0.66	0.85	2.22	7397	936	7	0	8	0	0	logfile
✔	8YLT	39390	2024-10-13	2024-03-06	3.09	3.71	3.14	3.4	0.007	0.89	0.0	0.04	15.91	0.00	2.215	4.00	0.90	2.7	97.3	0.0	0.18	0.76	0.74	2.29	3.4	0.006	0.72	2.0	0.04	16.09	0.00	2.136	4.03	0.99	4.0	96.0	0.0	1.04	0.50	0.76	0.75	2.08	65834	3978	8	0	4	0	32508	logfile
✔	8YLT	39390	2024-12-31	2024-03-06	3.09	3.71	3.14	3.4	0.007	0.89	0.0	0.04	15.91	0.00	2.215	4.00	0.90	2.7	97.3	0.0	0.18	0.76	0.74	2.29	3.4	0.006	0.72	2.0	0.04	16.09	0.00	2.136	4.03	0.99	4.0	96.0	0.0	1.04	0.50	0.76	0.75	2.08	65834	3978	8	0	4	0	32508	logfile
✔	8YLT	39390	2025-01-21	2024-03-06	3.09	3.71	3.14	3.4	0.007	0.89	0.0	0.04	15.91	0.00	2.215	4.00	0.90	2.7	97.3	0.0	0.18	0.76	0.74	2.29	3.4	0.004	0.48	0.0	0.04	15.99	0.00	2.160	2.99	0.63	3.5	96.5	0.0	1.48	0.47	0.77	0.76	2.10	65834	3978	8	0	4	0	32508	logfile
✔	8YKF	39369	2024-10-14	2024-03-05	3.35	3.53	3.41	3.4	0.005	0.78	0.0	0.05	16.25	0.00	2.095	5.00	1.27	2.8	97.1	0.0	-0.06	0.72	0.67	1.83	3.4	0.003	0.55	0.0	0.04	16.69	0.00	2.246	5.02	1.55	3.5	96.5	0.0	0.58	0.73	0.78	0.79	1.74	69382	4208	6	0	0	0	34366	logfile
✔	8YKF	39369	2025-01-22	2024-03-05	3.35	3.53	3.41	3.4	0.005	0.78	0.0	0.05	16.25	0.00	2.095	5.00	1.27	2.8	97.1	0.0	-0.06	0.72	0.67	1.83	3.4	0.003	0.51	0.0	0.04	16.61	0.00	2.283	4.17	1.32	2.6	97.3	0.0	1.21	0.71	0.78	0.79	1.59	69382	4208	6	0	0	0	34366	logfile
✔	8YKW	39374	2025-03-13	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.58	0.0	0.04	15.74	0.00	2.519	4.40	1.40	2.5	97.5	0.0	1.77	0.42	0.63	0.86	3.39	8718	1124	6	0	1	0	0	logfile
✔	8YKW	39374	2025-04-29	2024-03-05	2.75	3.17	2.86	3.1	0.005	0.66	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.60	0.0	0.04	15.74	0.00	2.502	4.63	1.72	2.5	97.5	0.0	1.75	0.42	0.63	0.86	3.29	8718	1124	6	0	1	0	0	logfile
✔	8YKW	39374	2025-05-12	2024-03-05	2.75	3.17	2.86	3.1	0.005	0.66	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.004	0.61	0.0	0.04	15.73	0.00	2.457	4.81	2.37	2.4	97.6	0.0	1.63	0.91	0.62	0.86	3.06	8718	1124	6	0	1	0	0	logfile
✔	8YKW	39374	2025-06-07	2024-03-05	2.75	3.17	2.86	3.1	0.005	0.66	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.60	0.0	0.04	15.74	0.00	2.502	4.63	1.72	2.5	97.5	0.0	1.75	0.42	0.63	0.86	3.29	8718	1124	6	0	1	0	0	logfile
✔	8YKW	39374	2025-07-26	2024-03-05	2.75	3.17	2.86	3.1	0.005	0.66	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.60	0.0	0.04	15.74	0.00	2.502	4.63	1.72	2.5	97.5	0.0	1.75	0.42	0.63	0.86	3.29	8718	1124	6	0	1	0	0	logfile
✔	8YKW	39374	2024-10-10	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.60	0.0	0.04	15.89	0.00	2.513	4.75	1.51	2.3	97.7	0.0	1.75	0.43	0.63	0.86	3.24	8718	1124	6	0	1	0	0	logfile
✔	8YKW	39374	2024-11-15	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.60	0.0	0.04	15.89	0.00	2.513	4.75	1.51	2.3	97.7	0.0	1.75	0.43	0.63	0.86	3.24	8718	1124	6	0	1	0	0	logfile
✔	8YKW	39374	2024-12-28	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.60	0.0	0.04	15.89	0.00	2.513	4.75	1.51	2.3	97.7	0.0	1.75	0.43	0.63	0.86	3.24	8718	1124	6	0	1	0	0	logfile
✔	8S86	19798	2024-12-27	2024-03-05	2.8	3.06	2.71	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.003	0.70	0.0	0.05	15.79	0.00	2.439	14.91	2.84	3.4	96.6	0.0	-0.25	1.20	0.59	0.64	2.28	6177	785	2	0	0	0	0	logfile
✔	8YKW	39374	2025-01-15	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.004	0.61	0.0	0.04	15.73	0.00	2.457	4.81	2.37	2.4	97.6	0.0	1.63	0.91	0.62	0.86	3.06	8718	1124	6	0	1	0	0	logfile

• ← previous
• Page 446 of 5055
• next →