Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YJP	39345	2025-03-06	2024-03-02	3.09	2.27	3.11	2.1	0.009	1.46	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.64	0.0	0.04	17.72	0.00	2.468	10.25	2.45	3.4	96.6	0.0	2.45	1.02	0.76	0.76	1.66	4946	596	4	0	13	0	0	logfile
✔	8YJP	39345	2025-04-27	2024-03-02	3.09	2.27	3.11	2.1	0.011	1.47	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.66	0.0	0.04	17.60	0.00	2.459	10.25	1.63	3.0	97.0	0.0	2.54	1.02	0.75	0.75	1.61	4946	596	4	0	13	0	0	logfile
✔	8YJP	39345	2025-05-10	2024-03-02	3.09	2.27	3.11	2.1	0.011	1.47	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.63	0.0	0.04	17.66	0.00	2.454	9.84	1.84	3.2	96.8	0.0	2.58	1.01	0.75	0.75	1.97	4946	596	4	0	13	0	0	logfile
✔	8YJP	39345	2025-07-24	2024-03-02	3.09	2.27	3.11	2.1	0.011	1.47	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.66	0.0	0.04	17.60	0.00	2.459	10.25	1.63	3.0	97.0	0.0	2.54	1.02	0.75	0.75	1.61	4946	596	4	0	13	0	0	logfile
✔	8YJR	39347	2025-07-28	2024-03-02	3.51	3.58	3.60	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.6	0.005	0.91	0.0	0.04	21.20	0.00	2.308	11.87	1.14	3.2	96.8	0.0	-0.78	0.50	0.83	0.81	2.29	9962	1113	8	65	0	0	0	logfile
✔	8YJR	39347	2024-12-29	2024-03-02	3.51	3.58	3.59	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.7	0.004	0.67	0.0	0.04	21.21	0.00	2.325	11.56	1.35	3.7	96.3	0.0	-0.77	0.49	0.83	0.81	2.54	9962	1113	8	65	0	0	0	logfile
✔	8YJR	39347	2025-01-16	2024-03-02	3.51	3.58	3.59	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.7	0.005	0.94	0.0	0.04	21.30	0.00	2.381	13.11	1.66	4.7	95.3	0.0	-1.01	0.50	0.83	0.82	2.53	9962	1113	8	65	0	0	0	logfile
✔	8YJR	39347	2025-02-14	2024-03-02	3.51	3.58	3.59	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.7	0.005	0.94	0.0	0.04	21.30	0.00	2.381	13.11	1.66	4.7	95.3	0.0	-1.01	0.50	0.83	0.82	2.53	9962	1113	8	65	0	0	0	logfile
✔	8YJR	39347	2025-05-13	2024-03-02	3.51	3.58	3.60	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.6	0.005	0.91	0.0	0.04	21.20	0.00	2.308	11.87	1.14	3.2	96.8	0.0	-0.78	0.50	0.83	0.81	2.29	9962	1113	8	65	0	0	0	logfile
✔	8YJR	39347	2025-06-09	2024-03-02	3.51	3.58	3.60	3.7	0.005	0.94	0.0	0.05	20.53	0.01	2.330	4.85	0.00	4.1	95.9	0.0	-3.40	0.81	0.79	2.36	3.6	0.005	0.91	0.0	0.04	21.20	0.00	2.308	11.87	1.14	3.2	96.8	0.0	-0.78	0.50	0.83	0.81	2.29	9962	1113	8	65	0	0	0	logfile
✔	8S7H	19772	2025-06-14	2024-03-01	2.8	2.85	1.65	4.2	0.004	1.03	0.0	0.05	14.77	0.01	2.167	18.22	0.84	2.3	97.7	0.0	0.46	0.50	0.45	0.25	4.2	0.004	0.96	0.0	0.05	17.96	0.01	2.442	11.89	1.98	3.1	96.9	0.0	-0.25	1.48	0.50	0.46	0.75	16120	2200	10	0	0	0	0	logfile
✔	8S7H	19772	2025-05-17	2024-03-01	2.8	2.85	1.65	4.2	0.004	1.03	0.0	0.05	14.77	0.01	2.167	18.22	0.84	2.3	97.7	0.0	0.46	0.50	0.45	0.25	4.2	0.004	0.92	0.0	0.05	17.83	0.01	2.439	10.95	1.80	3.3	96.7	0.0	-0.05	1.46	0.49	0.45	0.83	16120	2200	10	0	0	0	0	logfile
✔	8S7G	19771	2025-05-27	2024-03-01	3.43	4.12	3.60	3.4	0.007	0.67	0.0	0.05	15.83	0.00	1.689	45.11	1.95	5.2	94.6	0.1	-0.36	0.77	0.88	1.88	3.4	0.004	0.80	0.0	0.05	16.41	0.00	1.919	14.75	3.57	3.4	96.6	0.0	-0.23	1.45	0.78	0.89	1.53	30036	3856	25	36	22	0	0	logfile
✔	8S7G	19771	2025-06-26	2024-03-01	3.43	4.12	3.60	3.4	0.007	0.67	0.0	0.05	15.83	0.00	1.689	45.11	1.95	5.2	94.6	0.1	-0.36	0.77	0.88	1.88	3.4	0.004	0.81	0.0	0.05	16.45	0.00	1.960	14.64	3.20	3.6	96.4	0.0	-0.23	1.45	0.77	0.89	1.55	30036	3856	25	36	22	0	0	logfile
✔	8YJH	39342	2025-01-16	2024-03-01	3.68	3.64	3.65	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.003	0.64	0.0	0.04	19.75	0.00	2.493	11.71	1.86	3.4	96.6	0.0	-1.10	0.47	0.81	0.81	1.76	9735	1115	8	53	0	0	0	logfile
✔	8YJH	39342	2025-04-30	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.004	0.66	0.0	0.04	19.72	0.00	2.489	12.70	2.27	3.7	96.3	0.0	-1.16	0.95	0.82	0.81	1.63	9735	1115	8	53	0	0	0	logfile
✔	8YJH	39342	2025-05-13	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.003	0.64	0.0	0.04	19.75	0.00	2.493	11.71	1.86	3.4	96.6	0.0	-1.10	0.47	0.81	0.81	1.76	9735	1115	8	53	0	0	0	logfile
✔	8YJH	39342	2025-06-08	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.004	0.66	0.0	0.04	19.72	0.00	2.489	12.70	2.27	3.7	96.3	0.0	-1.16	0.95	0.82	0.81	1.63	9735	1115	8	53	0	0	0	logfile
✔	8YJH	39342	2025-03-14	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.004	0.67	0.0	0.04	19.76	0.00	2.500	12.76	2.37	3.9	96.1	0.0	-1.27	1.27	0.82	0.81	1.71	9735	1115	8	53	0	0	0	logfile
✔	8YJH	39342	2025-07-27	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.004	0.66	0.0	0.04	19.72	0.00	2.489	12.70	2.27	3.7	96.3	0.0	-1.16	0.95	0.82	0.81	1.63	9735	1115	8	53	0	0	0	logfile

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