Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YBQ	39121	2025-06-10	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.55	0.0	0.04	14.14	0.00	2.631	1.80	1.68	2.0	98.0	0.0	1.52	0.92	0.62	0.85	2.42	11700	1506	9	0	3	66	0	logfile
✔	8YBQ	39121	2025-01-18	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.56	0.0	0.04	14.14	0.00	2.630	1.84	1.77	2.2	97.8	0.0	1.43	1.26	0.63	0.85	2.42	11700	1506	9	0	3	66	0	logfile
✔	8YBQ	39121	2024-12-29	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.57	0.0	0.04	14.21	0.00	2.630	1.67	1.68	2.1	97.9	0.0	1.39	1.26	0.63	0.86	2.41	11700	1506	9	0	3	66	0	logfile
✔	8YBQ	39121	2024-11-16	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.57	0.0	0.04	14.21	0.00	2.630	1.67	1.68	2.1	97.9	0.0	1.39	1.26	0.63	0.86	2.41	11700	1506	9	0	3	66	0	logfile
✔	8YBQ	39121	2024-10-12	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.57	0.0	0.04	14.21	0.00	2.630	1.67	1.68	2.1	97.9	0.0	1.39	1.26	0.63	0.86	2.41	11700	1506	9	0	3	66	0	logfile
✔	8YBQ	39121	2025-07-29	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.55	0.0	0.04	14.14	0.00	2.631	1.80	1.68	2.0	98.0	0.0	1.52	0.92	0.62	0.85	2.42	11700	1506	9	0	3	66	0	logfile
✔	8YBQ	39121	2025-05-14	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.56	0.0	0.04	14.14	0.00	2.630	1.84	1.77	2.2	97.8	0.0	1.43	1.26	0.63	0.85	2.42	11700	1506	9	0	3	66	0	logfile
✔	8YBR	39122	2025-06-13	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.62	0.0	0.04	15.19	0.00	2.533	2.72	1.72	5.1	94.9	0.0	-0.15	0.55	0.84	0.85	2.76	15150	1941	3	0	0	0	0	logfile
✔	8YBR	39122	2025-01-20	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.62	0.0	0.04	15.24	0.00	2.517	2.65	1.53	5.1	94.9	0.0	-0.17	0.54	0.84	0.85	2.68	15150	1941	3	0	0	0	0	logfile
✔	8YBR	39122	2025-05-17	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.62	0.0	0.04	15.24	0.00	2.517	2.65	1.53	5.1	94.9	0.0	-0.17	0.54	0.84	0.85	2.68	15150	1941	3	0	0	0	0	logfile
✔	8YBR	39122	2024-10-13	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.63	0.0	0.04	15.05	0.00	2.535	2.55	1.47	5.3	94.7	0.0	-0.10	0.55	0.84	0.85	2.79	15150	1941	3	0	0	0	0	logfile
✔	8YBR	39122	2024-11-18	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.63	0.0	0.04	15.05	0.00	2.535	2.55	1.47	5.3	94.7	0.0	-0.10	0.55	0.84	0.85	2.79	15150	1941	3	0	0	0	0	logfile
✔	8YBR	39122	2024-12-31	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.63	0.0	0.04	15.05	0.00	2.535	2.55	1.47	5.3	94.7	0.0	-0.10	0.55	0.84	0.85	2.79	15150	1941	3	0	0	0	0	logfile
✔	8W1C	43719	2025-01-25	2024-02-15	3.6	3.61	3.65	3.7	0.003	0.53	0.0	0.04	13.36	0.01	2.203	5.60	0.05	2.2	97.8	0.0	0.86	0.69	0.82	1.91	3.8	0.003	0.74	0.0	0.04	16.63	0.00	2.410	8.14	2.43	2.8	97.2	0.0	0.62	1.37	0.71	0.85	1.88	77135	9580	15	0	0	0	0	logfile
✘	8W15	43715	2024-11-20	2024-02-15	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	0.92	—	—	2.90	3.3	0.003	0.62	0.0	0.04	16.60	0.00	2.293	6.92	1.53	2.8	97.2	0.0	2.00	—	0.86	0.87	2.12	21207	2710	2	0	0	0	0	logfile
✔	8W15	43715	2025-05-21	2024-02-15	2.72	3.63	3.61	3.3	0.003	0.57	1.0	0.04	16.09	0.00	2.133	6.71	1.36	2.9	97.1	0.0	0.92	0.87	0.89	2.90	3.3	0.003	0.60	0.0	0.04	16.61	0.00	2.482	6.57	1.70	2.7	97.2	0.0	2.12	0.33	0.86	0.87	2.14	21207	2710	2	0	0	0	0	logfile
✔	8W15	43715	2025-01-24	2024-02-15	2.72	3.63	3.61	3.3	0.003	0.57	1.0	0.04	16.09	0.00	2.133	6.71	1.36	2.9	97.1	0.0	0.92	0.87	0.89	2.90	3.3	0.003	0.60	0.0	0.04	16.61	0.00	2.482	6.57	1.70	2.7	97.2	0.0	2.12	0.33	0.86	0.87	2.14	21207	2710	2	0	0	0	0	logfile
✔	8W19	43716	2025-01-25	2024-02-15	4.4	4.24	4.38	4.1	0.004	0.80	0.0	0.05	14.56	0.01	2.202	6.88	0.01	4.1	95.9	0.0	-0.95	0.56	0.76	—	4.1	0.003	0.74	0.0	0.05	14.08	0.00	2.298	11.34	0.01	4.4	95.6	0.0	-0.37	1.37	0.56	0.82	—	76760	9525	15	0	0	0	0	logfile
✔	8W15	43715	2025-06-18	2024-02-15	2.72	3.63	3.61	3.3	0.003	0.57	1.0	0.04	16.09	0.00	2.133	6.71	1.36	2.9	97.1	0.0	0.92	0.87	0.89	2.90	3.3	0.003	0.60	0.0	0.04	16.61	0.00	2.488	6.74	1.40	2.7	97.2	0.0	2.16	0.34	0.86	0.87	2.04	21207	2710	2	0	0	0	0	logfile
✔	8YBJ	39119	2024-12-29	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile

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