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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8VWS | 43595 | 2025-01-21 | 2024-02-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11907 | 743 | 10 | 294 | 0 | 0 | 0 | logfile |
✘ | 8VWS | 43595 | 2025-06-14 | 2024-02-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11907 | 743 | 10 | 294 | 0 | 0 | 0 | logfile |
✘ | 8VWT | 43596 | 2025-01-21 | 2024-02-02 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14451 | 1061 | 11 | 294 | 0 | 0 | 0 | logfile |
✘ | 8VWS | 43595 | 2024-12-31 | 2024-02-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11907 | 743 | 10 | 294 | 0 | 0 | 0 | logfile |
✘ | 8VWS | 43595 | 2024-11-18 | 2024-02-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11907 | 743 | 10 | 294 | 0 | 0 | 0 | logfile |
✘ | 8VWT | 43596 | 2025-05-18 | 2024-02-02 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14451 | 1061 | 11 | 294 | 0 | 0 | 0 | logfile |
✘ | 8VWS | 43595 | 2025-05-17 | 2024-02-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11907 | 743 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 8VWH | 43586 | 2025-06-16 | 2024-02-01 | 3.06 | 3.44 | 3.05 | 3.4 | 0.002 | 0.46 | 0.0 | 0.04 | 16.10 | 0.00 | 2.115 | 10.64 | 0.10 | 4.5 | 95.5 | 0.0 | -0.56 | 0.53 | 0.73 | 2.23 | 3.4 | 0.005 | 0.78 | 0.0 | 0.05 | 16.92 | 0.00 | 2.273 | 11.10 | 3.95 | 4.9 | 95.1 | 0.0 | -0.49 | 1.40 | 0.54 | 0.74 | 1.96 | 18889 | 2329 | 15 | 0 | 7 | 0 | 0 | logfile |
✔ | 8VWH | 43586 | 2025-01-22 | 2024-02-01 | 3.06 | 3.44 | 3.07 | 3.4 | 0.002 | 0.44 | 0.0 | 0.04 | 16.10 | 0.00 | 2.115 | 10.64 | 0.10 | 4.5 | 95.5 | 0.0 | -0.56 | 0.53 | 0.73 | 2.23 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 17.00 | 0.00 | 2.394 | 10.48 | 3.90 | 5.1 | 94.9 | 0.0 | -0.41 | 1.41 | 0.53 | 0.74 | 1.92 | 18889 | 2329 | 15 | 0 | 7 | 0 | 0 | logfile |
✔ | 8VWH | 43586 | 2025-05-19 | 2024-02-01 | 3.06 | 3.44 | 3.05 | 3.4 | 0.002 | 0.46 | 0.0 | 0.04 | 16.10 | 0.00 | 2.115 | 10.64 | 0.10 | 4.5 | 95.5 | 0.0 | -0.56 | 0.53 | 0.73 | 2.23 | 3.4 | 0.004 | 0.78 | 1.0 | 0.05 | 16.92 | 0.00 | 2.196 | 11.12 | 3.62 | 5.2 | 94.8 | 0.0 | -0.45 | 1.40 | 0.53 | 0.74 | 1.83 | 18889 | 2329 | 15 | 0 | 7 | 0 | 0 | logfile |
✔ | 8VWH | 43586 | 2024-11-19 | 2024-02-01 | 3.06 | 3.44 | 3.07 | 3.4 | 0.002 | 0.44 | 0.0 | 0.04 | 16.10 | 0.00 | 2.115 | 10.64 | 0.10 | 4.5 | 95.5 | 0.0 | -0.56 | 0.53 | 0.73 | 2.23 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 17.15 | 0.00 | 2.404 | 10.85 | 4.19 | 5.3 | 94.7 | 0.0 | -0.67 | 1.41 | 0.55 | 0.75 | 2.05 | 18889 | 2329 | 15 | 0 | 7 | 0 | 0 | logfile |
✔ | 8Y5X | 38955 | 2025-03-12 | 2024-02-01 | 3.25 | 3.48 | 3.25 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 12.54 | 0.01 | 2.201 | 8.63 | 0.00 | 3.4 | 96.4 | 0.2 | 1.40 | 0.64 | 0.83 | 2.94 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 14.12 | 0.01 | 2.199 | 9.42 | 1.70 | 3.9 | 96.1 | 0.0 | 1.98 | 0.38 | 0.66 | 0.86 | 2.35 | 8032 | 1024 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8Y5X | 38955 | 2025-07-25 | 2024-02-01 | 3.25 | 3.48 | 3.25 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 12.54 | 0.01 | 2.201 | 8.63 | 0.00 | 3.4 | 96.4 | 0.2 | 1.40 | 0.64 | 0.83 | 2.94 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 14.12 | 0.01 | 2.199 | 9.42 | 1.70 | 3.9 | 96.1 | 0.0 | 1.98 | 0.38 | 0.66 | 0.86 | 2.35 | 8032 | 1024 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8Y5X | 38955 | 2025-06-06 | 2024-02-01 | 3.25 | 3.48 | 3.25 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 12.54 | 0.01 | 2.201 | 8.63 | 0.00 | 3.4 | 96.4 | 0.2 | 1.40 | 0.64 | 0.83 | 2.94 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 14.12 | 0.01 | 2.199 | 9.42 | 1.70 | 3.9 | 96.1 | 0.0 | 1.98 | 0.38 | 0.66 | 0.86 | 2.35 | 8032 | 1024 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8Y5X | 38955 | 2025-04-28 | 2024-02-01 | 3.25 | 3.48 | 3.25 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 12.54 | 0.01 | 2.201 | 8.63 | 0.00 | 3.4 | 96.4 | 0.2 | 1.40 | 0.64 | 0.83 | 2.94 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 14.12 | 0.01 | 2.199 | 9.42 | 1.70 | 3.9 | 96.1 | 0.0 | 1.98 | 0.38 | 0.66 | 0.86 | 2.35 | 8032 | 1024 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8Y5X | 38955 | 2025-02-12 | 2024-02-01 | 3.25 | 3.48 | 3.25 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 12.54 | 0.01 | 2.201 | 8.63 | 0.00 | 3.4 | 96.4 | 0.2 | 1.40 | 0.64 | 0.83 | 2.94 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 14.19 | 0.01 | 2.189 | 9.30 | 1.82 | 3.9 | 96.1 | 0.0 | 1.91 | 0.38 | 0.65 | 0.85 | 2.40 | 8032 | 1024 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8Y5X | 38955 | 2025-05-11 | 2024-02-01 | 3.25 | 3.48 | 3.25 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 12.54 | 0.01 | 2.201 | 8.63 | 0.00 | 3.4 | 96.4 | 0.2 | 1.40 | 0.64 | 0.83 | 2.94 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 14.19 | 0.01 | 2.189 | 9.30 | 1.82 | 3.9 | 96.1 | 0.0 | 1.91 | 0.38 | 0.65 | 0.85 | 2.40 | 8032 | 1024 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8Y62 | 38964 | 2025-03-12 | 2024-02-01 | 3.2 | 2.90 | 3.23 | 3.3 | 0.006 | 0.73 | 0.0 | 0.05 | 13.81 | 0.00 | 2.202 | 9.41 | 0.13 | 5.0 | 95.0 | 0.0 | -1.49 | 0.79 | 0.84 | 3.17 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 15.22 | 0.00 | 2.538 | 7.05 | 2.74 | 3.2 | 96.8 | 0.0 | 0.08 | 0.38 | 0.80 | 0.85 | 2.32 | 8160 | 1128 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8Y5U | 38953 | 2025-02-12 | 2024-02-01 | 3.04 | 3.34 | 3.12 | 3.4 | 0.004 | 0.62 | 0.0 | 0.04 | 13.06 | 0.01 | 2.215 | 8.29 | 0.12 | 3.7 | 96.2 | 0.1 | 1.88 | 0.68 | 0.85 | 2.62 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.04 | 0.01 | 2.325 | 7.55 | 1.84 | 3.1 | 96.8 | 0.1 | 2.02 | 0.36 | 0.60 | 0.85 | 2.53 | 7961 | 1016 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 8Y62 | 38964 | 2025-04-28 | 2024-02-01 | 3.2 | 2.90 | 3.23 | 3.3 | 0.006 | 0.73 | 0.0 | 0.05 | 13.81 | 0.00 | 2.202 | 9.41 | 0.13 | 5.0 | 95.0 | 0.0 | -1.49 | 0.79 | 0.84 | 3.17 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 15.22 | 0.00 | 2.538 | 7.05 | 2.74 | 3.2 | 96.8 | 0.0 | 0.08 | 0.38 | 0.80 | 0.85 | 2.32 | 8160 | 1128 | 6 | 0 | 1 | 0 | 0 | logfile |