Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VKJ	43319	2024-10-10	2024-01-09	2.92	3.19	2.94	3.2	0.005	0.63	0.0	0.04	16.09	0.01	2.201	9.71	0.34	4.5	95.4	0.1	0.61	0.62	0.86	4.03	3.2	0.003	0.56	0.0	0.04	15.58	0.00	2.513	7.72	1.60	4.0	95.9	0.1	0.81	0.84	0.65	0.87	3.39	8622	1089	5	0	9	0	0	logfile
✔	8VKJ	43319	2024-09-24	2024-01-09	2.92	3.19	2.94	3.2	0.005	0.63	0.0	0.04	16.09	0.01	2.201	9.71	0.34	4.5	95.4	0.1	0.61	0.62	0.86	4.03	3.2	0.003	0.56	0.0	0.04	15.58	0.00	2.513	7.72	1.60	4.0	95.9	0.1	0.81	0.84	0.65	0.87	3.39	8622	1089	5	0	9	0	0	logfile
✔	8VKJ	43319	2025-06-07	2024-01-09	2.92	3.19	2.94	3.2	0.005	0.64	0.0	0.04	16.09	0.01	2.201	9.71	0.34	4.5	95.4	0.1	0.61	0.62	0.86	4.03	3.2	0.004	0.58	0.0	0.04	15.67	0.00	2.509	8.07	1.72	4.1	95.8	0.1	0.69	0.84	0.65	0.86	3.71	8622	1089	5	0	9	0	0	logfile
✔	8VKJ	43319	2025-05-12	2024-01-09	2.92	3.19	2.94	3.2	0.005	0.64	0.0	0.04	16.09	0.01	2.201	9.71	0.34	4.5	95.4	0.1	0.61	0.62	0.86	4.03	3.2	0.004	0.58	0.0	0.04	15.66	0.00	2.510	7.66	2.17	4.2	95.7	0.1	0.65	0.84	0.65	0.87	3.74	8622	1089	5	0	9	0	0	logfile
✔	8RN1	19383	2025-06-28	2024-01-09	3.64	3.91	3.77	3.8	0.003	0.53	0.0	0.04	16.64	0.00	1.933	10.27	0.34	4.5	95.5	0.0	0.30	0.72	0.80	1.57	3.8	0.003	0.55	0.0	0.04	16.93	0.00	2.411	6.65	1.57	4.2	95.8	0.0	0.41	0.48	0.72	0.81	1.44	32902	2037	4	12	0	0	16438	logfile
✘	8XSR	38626	2025-06-08	2024-01-09	2.93	3.12	2.93	3.1	0.006	1.03	0.0	0.05	10.79	0.00	1.972	13.22	0.73	7.7	92.1	0.3	-5.75	0.63	0.86	3.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9130	1190	4	0	4	0	0	logfile
✘	8VKE	43315	2024-12-27	2024-01-09	3.1	3.35	3.10	3.3	0.003	0.59	0.0	0.04	14.19	0.00	2.103	5.82	0.14	2.6	97.4	0.0	-0.05	0.77	0.85	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6652	854	8	0	2	0	0	logfile
✔	8RNC	19394	2025-01-23	2024-01-09	3.52	3.95	3.79	3.8	0.002	0.51	1.0	0.04	16.41	0.00	1.788	8.46	0.33	4.7	95.2	0.1	0.38	0.72	0.73	1.26	3.8	0.003	0.58	0.0	0.04	17.12	0.00	2.269	7.69	1.89	5.0	94.9	0.1	0.02	1.02	0.72	0.77	1.40	71539	4477	9	0	0	0	35901	logfile
✔	8RNC	19394	2024-09-28	2024-01-09	3.52	3.95	3.79	3.8	0.002	0.51	1.0	0.04	16.41	0.00	1.788	8.46	0.33	4.7	95.2	0.1	0.38	0.72	0.73	1.26	3.8	0.003	0.60	0.0	0.04	17.26	0.00	2.249	8.08	1.51	5.0	95.0	0.1	-0.16	1.05	0.72	0.77	1.39	71539	4477	9	0	0	0	35901	logfile
✔	8RNC	19394	2024-10-14	2024-01-09	3.52	3.95	3.79	3.8	0.002	0.51	1.0	0.04	16.41	0.00	1.788	8.46	0.33	4.7	95.2	0.1	0.38	0.72	0.73	1.26	3.8	0.004	0.59	0.0	0.04	17.17	0.00	2.221	8.09	2.09	5.6	94.3	0.1	-0.13	1.03	0.73	0.77	1.44	71539	4477	9	0	0	0	35901	logfile
✔	8RN6	19388	2025-05-22	2024-01-09	2.82	3.09	2.90	3.1	0.003	0.57	0.0	0.04	17.61	0.00	2.145	5.82	2.21	4.4	95.6	0.1	0.28	0.65	0.86	3.72	3.1	0.003	0.57	0.0	0.04	17.57	0.00	2.188	4.12	2.53	4.4	95.5	0.1	0.29	0.33	0.62	0.86	3.87	23047	1455	3	0	0	0	11505	logfile
✘	8VKE	43315	2024-11-14	2024-01-09	3.1	3.35	3.10	3.3	0.003	0.59	0.0	0.04	14.19	0.00	2.103	5.82	0.14	2.6	97.4	0.0	-0.05	0.77	0.85	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6652	854	8	0	2	0	0	logfile
✔	8RN6	19388	2025-06-19	2024-01-09	2.82	3.09	2.90	3.1	0.003	0.57	0.0	0.04	17.61	0.00	2.145	5.82	2.21	4.4	95.6	0.1	0.28	0.65	0.86	3.72	3.1	0.003	0.56	0.0	0.04	17.58	0.00	2.203	4.04	2.37	4.4	95.6	0.1	0.40	0.33	0.61	0.85	3.80	23047	1455	3	0	0	0	11505	logfile
✘	8XSM	38622	2025-05-09	2024-01-09	3.01	3.31	3.04	3.3	0.008	0.93	0.0	0.05	13.81	0.01	2.161	5.27	1.40	3.8	96.2	0.0	-1.76	0.54	0.81	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2788	375	2	0	2	0	0	logfile
✔	8VKH	43316	2025-01-25	2024-01-09	3.63	4.23	3.83	4.0	0.006	1.11	0.0	0.06	13.87	0.01	2.321	2.10	0.16	3.0	97.0	0.0	-1.79	0.79	0.84	1.86	3.9	0.003	0.66	0.0	0.04	15.08	0.00	2.218	6.83	0.89	3.1	96.9	0.0	0.66	0.53	0.80	0.86	1.65	23287	2949	16	0	20	0	0	logfile
✔	8RN6	19388	2025-01-25	2024-01-09	2.82	3.09	2.90	3.1	0.003	0.57	0.0	0.04	17.61	0.00	2.145	5.82	2.21	4.4	95.6	0.1	0.28	0.65	0.86	3.72	3.1	0.003	0.57	0.0	0.04	17.57	0.00	2.188	4.12	2.53	4.4	95.5	0.1	0.29	0.33	0.62	0.86	3.87	23047	1455	3	0	0	0	11505	logfile
✔	8RN6	19388	2024-09-29	2024-01-09	2.82	3.09	2.90	3.1	0.003	0.57	0.0	0.04	17.61	0.00	2.145	5.82	2.21	4.4	95.6	0.1	0.28	0.65	0.86	3.72	3.1	0.003	0.57	0.0	0.04	17.56	0.00	2.173	4.21	2.77	4.5	95.4	0.1	0.28	0.33	0.62	0.85	3.88	23047	1455	3	0	0	0	11505	logfile
✔	8VKH	43316	2025-05-22	2024-01-09	3.63	4.23	3.82	4.0	0.006	1.11	0.0	0.06	13.87	0.01	2.321	2.10	0.16	3.0	97.0	0.0	-1.79	0.79	0.84	1.86	3.9	0.003	0.66	0.0	0.04	15.08	0.00	2.218	6.83	0.89	3.1	96.9	0.0	0.66	0.53	0.80	0.86	1.65	23287	2949	16	0	20	0	0	logfile
✔	8RN3	19385	2025-06-27	2024-01-09	2.78	3.04	2.86	3.0	0.003	0.49	0.0	0.04	17.48	0.00	1.907	5.72	2.49	4.0	95.9	0.1	0.35	0.65	0.84	3.18	3.0	0.003	0.51	0.0	0.04	17.45	0.00	1.897	3.39	2.21	4.6	95.3	0.1	0.27	0.88	0.66	0.86	3.31	32158	2020	7	0	3	0	16100	logfile
✔	8RN3	19385	2025-05-29	2024-01-09	2.78	3.04	2.86	3.0	0.003	0.49	0.0	0.04	17.48	0.00	1.907	5.72	2.49	4.0	95.9	0.1	0.35	0.65	0.84	3.18	3.0	0.003	0.51	0.0	0.04	17.46	0.00	1.897	3.36	2.27	4.4	95.5	0.1	0.33	0.88	0.65	0.85	3.31	32158	2020	7	0	3	0	16100	logfile

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