Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8Y2E	38852	2024-12-27	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4214	528	2	0	3	0	0	logfile
✔	8Y2E	38852	2025-06-04	2024-01-25	3.03	3.33	3.14	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.53	0.0	0.04	16.71	0.00	2.627	2.14	4.52	3.4	96.6	0.0	1.78	0.26	0.58	0.84	3.06	4214	528	2	0	3	0	0	logfile
✔	8Y2E	38852	2025-02-11	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.52	0.0	0.04	16.68	0.00	2.629	2.37	4.07	3.3	96.7	0.0	1.78	0.26	0.58	0.84	2.97	4214	528	2	0	3	0	0	logfile
✘	8Y2D	38851	2025-03-06	2024-01-25	2.8	2.99	2.86	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4189	528	2	0	4	4	0	logfile
✔	8Y2E	38852	2025-05-09	2024-01-25	3.03	3.33	3.14	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.54	0.0	0.04	16.71	0.00	2.623	2.26	3.85	3.8	96.2	0.0	1.74	0.26	0.58	0.84	3.04	4214	528	2	0	3	0	0	logfile
✔	8Y2E	38852	2025-04-27	2024-01-25	3.03	3.33	3.14	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.53	0.0	0.04	16.71	0.00	2.627	2.14	4.52	3.4	96.6	0.0	1.78	0.26	0.58	0.84	3.06	4214	528	2	0	3	0	0	logfile
✔	8Y2E	38852	2025-03-06	2024-01-25	3.03	3.33	3.14	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.53	0.0	0.04	16.71	0.00	2.627	2.14	4.52	3.4	96.6	0.0	1.78	0.26	0.58	0.84	3.06	4214	528	2	0	3	0	0	logfile
✔	8Y2D	38851	2024-12-27	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.003	0.52	0.0	0.04	16.94	0.00	2.223	1.79	2.48	4.0	96.0	0.0	1.04	0.23	0.60	0.86	2.03	4189	528	2	0	4	4	0	logfile
✔	8Y2D	38851	2024-11-14	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.003	0.52	0.0	0.04	16.94	0.00	2.223	1.79	2.48	4.0	96.0	0.0	1.04	0.23	0.60	0.86	2.03	4189	528	2	0	4	4	0	logfile
✔	8Y2D	38851	2024-10-09	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.003	0.52	0.0	0.04	16.94	0.00	2.223	1.79	2.48	4.0	96.0	0.0	1.04	0.23	0.60	0.86	2.03	4189	528	2	0	4	4	0	logfile
✘	8Y2D	38851	2025-06-04	2024-01-25	2.8	2.99	2.86	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4189	528	2	0	4	4	0	logfile
✔	8Y2D	38851	2025-05-09	2024-01-25	2.8	2.99	2.86	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.002	0.48	0.0	0.04	16.89	0.00	2.263	1.56	2.26	2.9	97.1	0.0	1.20	0.24	0.59	0.85	1.86	4189	528	2	0	4	4	0	logfile
✘	8Y2D	38851	2025-04-27	2024-01-25	2.8	2.99	2.86	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4189	528	2	0	4	4	0	logfile
✔	8Y2E	38852	2025-01-13	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	3.3	0.003	0.52	0.0	0.04	16.68	0.00	2.629	2.37	4.07	3.3	96.7	0.0	1.78	0.26	0.58	0.84	2.97	4214	528	2	0	3	0	0	logfile
✔	8Y2D	38851	2025-02-11	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.002	0.48	0.0	0.04	16.89	0.00	2.263	1.56	2.26	2.9	97.1	0.0	1.20	0.24	0.59	0.85	1.86	4189	528	2	0	4	4	0	logfile
✔	8Y2D	38851	2025-01-13	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.002	0.48	0.0	0.04	16.89	0.00	2.263	1.56	2.26	2.9	97.1	0.0	1.20	0.24	0.59	0.85	1.86	4189	528	2	0	4	4	0	logfile
✔	8VSZ	43512	2024-12-30	2024-01-25	3.07	3.28	3.17	3.3	0.003	0.65	0.0	0.05	19.65	0.00	2.032	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.004	0.73	0.0	0.05	18.08	0.00	2.308	9.71	4.62	3.8	95.8	0.3	-0.09	1.27	0.66	0.81	2.43	13220	1580	15	0	25	0	0	logfile
✔	8VSZ	43512	2025-06-11	2024-01-25	3.07	3.28	3.18	3.3	0.003	0.66	0.0	0.05	19.65	0.00	2.233	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.007	0.82	0.0	0.05	18.07	0.00	2.317	9.33	4.83	4.3	95.4	0.3	-0.27	1.26	0.67	0.82	2.23	13220	1580	15	0	25	0	0	logfile
✔	8VSZ	43512	2025-05-15	2024-01-25	3.07	3.28	3.18	3.3	0.003	0.66	0.0	0.05	19.65	0.00	2.233	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.006	0.82	0.0	0.05	17.99	0.00	2.269	9.37	4.20	4.1	95.6	0.3	-0.22	1.26	0.67	0.82	2.17	13220	1580	15	0	25	0	0	logfile
✔	8VSZ	43512	2025-07-31	2024-01-25	3.07	3.28	3.18	3.3	0.003	0.66	0.0	0.05	19.65	0.00	2.233	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.007	0.82	0.0	0.05	18.07	0.00	2.317	9.33	4.83	4.3	95.4	0.3	-0.27	1.26	0.67	0.82	2.23	13220	1580	15	0	25	0	0	logfile

• ← previous
• Page 544 of 5055
• next →