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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8Vi0 | 43245 | 2025-05-18 | 2024-01-02 | 3.0 | 3.40 | 3.02 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 15.05 | 0.00 | 2.166 | 6.87 | 1.45 | 2.3 | 97.7 | 0.0 | 1.59 | 0.75 | 0.84 | 2.23 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 2.444 | 5.98 | 3.21 | 3.2 | 96.8 | 0.0 | 1.34 | 0.35 | 0.63 | 0.78 | 2.48 | 17454 | 2171 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 8Vi0 | 43245 | 2025-06-15 | 2024-01-02 | 3.0 | 3.40 | 3.02 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 15.05 | 0.00 | 2.166 | 6.87 | 1.45 | 2.3 | 97.7 | 0.0 | 1.59 | 0.75 | 0.84 | 2.23 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 15.95 | 0.00 | 2.426 | 5.98 | 3.64 | 3.2 | 96.8 | 0.0 | 1.29 | 0.34 | 0.63 | 0.79 | 2.43 | 17454 | 2171 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 8RL7 | 19333 | 2025-06-14 | 2024-01-02 | 3.76 | 3.99 | 3.67 | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 12.70 | 0.01 | 2.140 | 7.78 | 0.74 | 2.8 | 97.2 | 0.0 | 1.89 | 0.55 | 0.70 | 2.26 | 3.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.85 | 0.00 | 2.374 | 7.77 | 2.21 | 2.8 | 97.2 | 0.0 | 2.42 | 0.68 | 0.58 | 0.76 | 1.94 | 16262 | 1100 | 6 | 0 | 2 | 0 | 8042 | logfile |
✔ | 8RL7 | 19333 | 2025-05-17 | 2024-01-02 | 3.76 | 3.99 | 3.67 | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 12.70 | 0.01 | 2.140 | 7.78 | 0.74 | 2.8 | 97.2 | 0.0 | 1.89 | 0.55 | 0.70 | 2.26 | 3.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.88 | 0.00 | 2.373 | 7.53 | 2.57 | 2.7 | 97.3 | 0.0 | 2.44 | 0.70 | 0.58 | 0.76 | 1.90 | 16262 | 1100 | 6 | 0 | 2 | 0 | 8042 | logfile |
✔ | 8RLD | 19339 | 2025-02-11 | 2024-01-02 | 2.84 | 2.96 | 2.86 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.39 | 0.00 | 1.981 | 7.12 | 0.00 | 1.2 | 98.8 | 0.0 | 1.29 | 0.45 | 0.58 | 1.50 | 3.0 | 0.004 | 0.60 | 0.0 | 0.04 | 15.26 | 0.01 | 2.345 | 7.59 | 0.91 | 3.1 | 96.9 | 0.0 | 1.51 | 0.68 | 0.49 | 0.63 | 2.23 | 6416 | 422 | 2 | 0 | 1 | 0 | 3209 | logfile |
✔ | 8RLD | 19339 | 2025-03-11 | 2024-01-02 | 2.84 | 2.96 | 2.86 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.39 | 0.00 | 1.981 | 7.12 | 0.00 | 1.2 | 98.8 | 0.0 | 1.29 | 0.45 | 0.58 | 1.50 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 15.43 | 0.00 | 2.337 | 7.43 | 2.13 | 3.4 | 96.6 | 0.0 | 1.32 | 0.70 | 0.50 | 0.64 | 2.35 | 6416 | 422 | 2 | 0 | 1 | 0 | 3209 | logfile |
✔ | 8RLD | 19339 | 2025-07-24 | 2024-01-02 | 2.84 | 2.96 | 2.86 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.39 | 0.00 | 1.981 | 7.12 | 0.00 | 1.2 | 98.8 | 0.0 | 1.29 | 0.45 | 0.58 | 1.50 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 15.43 | 0.00 | 2.337 | 7.43 | 2.13 | 3.4 | 96.6 | 0.0 | 1.32 | 0.70 | 0.50 | 0.64 | 2.35 | 6416 | 422 | 2 | 0 | 1 | 0 | 3209 | logfile |
✔ | 8RLD | 19339 | 2025-04-27 | 2024-01-02 | 2.84 | 2.96 | 2.86 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.39 | 0.00 | 1.981 | 7.12 | 0.00 | 1.2 | 98.8 | 0.0 | 1.29 | 0.45 | 0.58 | 1.50 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 15.43 | 0.00 | 2.337 | 7.43 | 2.13 | 3.4 | 96.6 | 0.0 | 1.32 | 0.70 | 0.50 | 0.64 | 2.35 | 6416 | 422 | 2 | 0 | 1 | 0 | 3209 | logfile |
✔ | 8RLD | 19339 | 2025-06-05 | 2024-01-02 | 2.84 | 2.96 | 2.86 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.39 | 0.00 | 1.981 | 7.12 | 0.00 | 1.2 | 98.8 | 0.0 | 1.29 | 0.45 | 0.58 | 1.50 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 15.43 | 0.00 | 2.337 | 7.43 | 2.13 | 3.4 | 96.6 | 0.0 | 1.32 | 0.70 | 0.50 | 0.64 | 2.35 | 6416 | 422 | 2 | 0 | 1 | 0 | 3209 | logfile |
✔ | 8VHZ | 43244 | 2025-05-18 | 2024-01-02 | 3.3 | 3.70 | 3.45 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 14.89 | 0.01 | 2.275 | 6.29 | 0.16 | 3.0 | 97.0 | 0.0 | 1.54 | 0.58 | 0.72 | 1.99 | 3.6 | 0.002 | 0.59 | 0.0 | 0.04 | 15.53 | 0.00 | 2.523 | 5.40 | 2.14 | 3.5 | 96.5 | 0.0 | 1.89 | 1.17 | 0.67 | 0.81 | 2.20 | 17208 | 2142 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XoT | 38540 | 2024-12-26 | 2024-01-02 | 3.51 | 4.52 | 3.54 | 3.9 | 0.005 | 0.81 | 0.0 | 0.04 | 16.39 | 0.01 | 2.109 | 19.64 | 0.67 | 5.2 | 94.5 | 0.4 | 0.82 | 0.77 | 0.84 | 1.37 | 4.0 | 0.003 | 0.83 | 0.0 | 0.04 | 16.92 | 0.01 | 2.458 | 11.78 | 2.79 | 5.0 | 94.7 | 0.2 | 0.73 | 0.42 | 0.77 | 0.84 | 1.16 | 44532 | 5688 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 8RLA | 19336 | 2025-06-07 | 2024-01-02 | 3.03 | 2.57 | 3.09 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 13.05 | 0.00 | 2.009 | 10.36 | 0.00 | 2.0 | 98.0 | 0.0 | 0.42 | 0.73 | 0.71 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8304 | 560 | 3 | 0 | 1 | 0 | 4091 | logfile |
✔ | 8RL8 | 19334 | 2025-05-10 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.23 | 0.00 | 2.429 | 7.68 | 3.01 | 1.4 | 98.6 | 0.0 | 2.49 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL6 | 19332 | 2025-03-11 | 2024-01-02 | 3.18 | 2.29 | 3.42 | 2.9 | 0.002 | 0.49 | 0.0 | 0.04 | 13.54 | 0.00 | 2.207 | 9.09 | 0.00 | 1.4 | 98.6 | 0.0 | 1.86 | 0.61 | 0.58 | 1.43 | 1.8 | 0.004 | 0.60 | 0.0 | 0.04 | 15.84 | 0.00 | 2.257 | 12.32 | 1.50 | 4.4 | 95.6 | 0.0 | 0.50 | 0.65 | 0.62 | 0.61 | 1.75 | 6493 | 436 | 2 | 0 | 1 | 0 | 3217 | logfile |
✔ | 8RL6 | 19332 | 2025-02-11 | 2024-01-02 | 3.18 | 2.29 | 3.43 | 2.9 | 0.002 | 0.49 | 0.0 | 0.04 | 13.54 | 0.00 | 2.207 | 9.09 | 0.00 | 1.4 | 98.6 | 0.0 | 1.86 | 0.61 | 0.58 | 1.43 | 1.8 | 0.003 | 0.61 | 0.0 | 0.04 | 15.78 | 0.00 | 2.261 | 13.71 | 1.80 | 4.9 | 95.1 | 0.0 | -0.03 | 0.65 | 0.62 | 0.61 | 1.65 | 6493 | 436 | 2 | 0 | 1 | 0 | 3217 | logfile |
✔ | 8RL8 | 19334 | 2025-04-27 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 2.431 | 7.84 | 2.41 | 1.4 | 98.6 | 0.0 | 2.48 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-03-11 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 2.431 | 7.84 | 2.41 | 1.4 | 98.6 | 0.0 | 2.48 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-06-05 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 2.431 | 7.84 | 2.41 | 1.4 | 98.6 | 0.0 | 2.48 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RL8 | 19334 | 2025-07-24 | 2024-01-02 | 2.79 | 2.21 | 2.86 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.36 | 0.00 | 2.172 | 7.53 | 0.00 | 1.2 | 98.8 | 0.0 | 1.43 | 0.65 | 0.72 | 2.63 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 2.431 | 7.84 | 2.41 | 1.4 | 98.6 | 0.0 | 2.48 | 1.02 | 0.67 | 0.74 | 3.17 | 6469 | 421 | 2 | 0 | 1 | 0 | 3252 | logfile |
✔ | 8RLC | 19338 | 2025-07-31 | 2024-01-02 | 3.9 | 4.07 | 3.88 | 4.0 | 0.003 | 0.49 | 0.0 | 0.04 | 13.21 | 0.00 | 2.204 | 6.40 | 0.00 | 1.5 | 98.5 | 0.0 | 1.54 | 0.58 | 0.66 | 1.68 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 14.95 | 0.00 | 2.360 | 7.71 | 2.66 | 2.2 | 97.8 | 0.0 | 1.60 | 1.13 | 0.61 | 0.71 | 1.45 | 12911 | 866 | 5 | 0 | 1 | 0 | 6330 | logfile |