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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8XLR | 38456 | 2025-05-15 | 2023-12-26 | 2.93 | 3.11 | 2.94 | 3.1 | 0.005 | 0.72 | 2.0 | 0.05 | 17.01 | 0.01 | 2.293 | 1.57 | 0.59 | 2.4 | 97.6 | 0.0 | 0.05 | 0.69 | 0.83 | 2.02 | 3.1 | 0.002 | 0.52 | 0.0 | 0.04 | 16.75 | 0.00 | 2.304 | 1.86 | 2.60 | 1.5 | 98.5 | 0.0 | 0.97 | 0.27 | 0.71 | 0.83 | 1.84 | 13338 | 1514 | 4 | 0 | 66 | 0 | 0 | logfile |
✔ | 8XLM | 38453 | 2025-05-26 | 2023-12-26 | 3.22 | 3.64 | 3.18 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 19.13 | 0.01 | 2.148 | 7.31 | 0.16 | 9.2 | 90.5 | 0.3 | -0.71 | 0.77 | 0.76 | 1.66 | 3.4 | 0.005 | 0.65 | 0.0 | 0.05 | 17.50 | 0.00 | 2.354 | 6.33 | 3.09 | 9.1 | 90.7 | 0.2 | -0.92 | 1.10 | 0.81 | 0.86 | 1.75 | 28596 | 3529 | 18 | 0 | 57 | 0 | 0 | logfile |
✔ | 8XLM | 38453 | 2025-06-24 | 2023-12-26 | 3.22 | 3.64 | 3.18 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 19.13 | 0.01 | 2.148 | 7.31 | 0.16 | 9.2 | 90.5 | 0.3 | -0.71 | 0.77 | 0.76 | 1.66 | 3.4 | 0.006 | 0.67 | 0.0 | 0.05 | 17.53 | 0.00 | 2.392 | 6.53 | 2.26 | 8.9 | 90.9 | 0.2 | -1.00 | 1.10 | 0.81 | 0.86 | 1.79 | 28596 | 3529 | 18 | 0 | 57 | 0 | 0 | logfile |
✔ | 8XLN | 38454 | 2025-05-13 | 2023-12-26 | 3.78 | 3.92 | 3.73 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 17.14 | 0.00 | 2.162 | 7.15 | 0.00 | 6.2 | 93.8 | 0.0 | 0.46 | 0.78 | 0.81 | 1.72 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.52 | 0.00 | 2.517 | 5.44 | 2.02 | 6.5 | 93.5 | 0.0 | 0.32 | 0.37 | 0.79 | 0.83 | 1.40 | 6593 | 789 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 8XLN | 38454 | 2025-01-17 | 2023-12-26 | 3.78 | 3.92 | 3.75 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 17.14 | 0.00 | 2.162 | 7.15 | 0.00 | 6.2 | 93.8 | 0.0 | 0.46 | 0.78 | 0.81 | 1.72 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 16.30 | 0.00 | 2.499 | 5.52 | 1.30 | 5.7 | 94.3 | 0.0 | 0.46 | 0.38 | 0.79 | 0.82 | 1.29 | 6593 | 789 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 8XLN | 38454 | 2024-12-29 | 2023-12-26 | 3.78 | 3.92 | 3.75 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 17.14 | 0.00 | 2.162 | 7.15 | 0.00 | 6.2 | 93.8 | 0.0 | 0.46 | 0.78 | 0.81 | 1.72 | 3.8 | 0.002 | 0.60 | 0.0 | 0.04 | 16.27 | 0.00 | 2.495 | 4.82 | 1.01 | 5.2 | 94.8 | 0.0 | 0.55 | 0.38 | 0.79 | 0.82 | 1.37 | 6593 | 789 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 8XLN | 38454 | 2024-11-16 | 2023-12-26 | 3.78 | 3.92 | 3.75 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 17.14 | 0.00 | 2.162 | 7.15 | 0.00 | 6.2 | 93.8 | 0.0 | 0.46 | 0.78 | 0.81 | 1.72 | 3.8 | 0.002 | 0.60 | 0.0 | 0.04 | 16.27 | 0.00 | 2.495 | 4.82 | 1.01 | 5.2 | 94.8 | 0.0 | 0.55 | 0.38 | 0.79 | 0.82 | 1.37 | 6593 | 789 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 8XLN | 38454 | 2024-10-11 | 2023-12-26 | 3.78 | 3.92 | 3.75 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 17.14 | 0.00 | 2.162 | 7.15 | 0.00 | 6.2 | 93.8 | 0.0 | 0.46 | 0.78 | 0.81 | 1.72 | 3.8 | 0.002 | 0.60 | 0.0 | 0.04 | 16.27 | 0.00 | 2.495 | 4.82 | 1.01 | 5.2 | 94.8 | 0.0 | 0.55 | 0.38 | 0.79 | 0.82 | 1.37 | 6593 | 789 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 8XLN | 38454 | 2025-07-28 | 2023-12-26 | 3.78 | 3.92 | 3.73 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 17.14 | 0.00 | 2.162 | 7.15 | 0.00 | 6.2 | 93.8 | 0.0 | 0.46 | 0.78 | 0.81 | 1.72 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.42 | 0.00 | 2.500 | 5.36 | 1.59 | 6.1 | 93.9 | 0.0 | 0.40 | 0.37 | 0.79 | 0.83 | 1.37 | 6593 | 789 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 8XLN | 38454 | 2025-06-09 | 2023-12-26 | 3.78 | 3.92 | 3.73 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 17.14 | 0.00 | 2.162 | 7.15 | 0.00 | 6.2 | 93.8 | 0.0 | 0.46 | 0.78 | 0.81 | 1.72 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.42 | 0.00 | 2.500 | 5.36 | 1.59 | 6.1 | 93.9 | 0.0 | 0.40 | 0.37 | 0.79 | 0.83 | 1.37 | 6593 | 789 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 8XLN | 38454 | 2025-02-14 | 2023-12-26 | 3.78 | 3.92 | 3.75 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 17.14 | 0.00 | 2.162 | 7.15 | 0.00 | 6.2 | 93.8 | 0.0 | 0.46 | 0.78 | 0.81 | 1.72 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 16.30 | 0.00 | 2.499 | 5.52 | 1.30 | 5.7 | 94.3 | 0.0 | 0.46 | 0.38 | 0.79 | 0.82 | 1.29 | 6593 | 789 | 8 | 0 | 15 | 0 | 0 | logfile |
✔ | 8XL4 | 38437 | 2024-12-28 | 2023-12-25 | 3.38 | 3.69 | 3.57 | 3.6 | 0.010 | 1.05 | 0.0 | 0.06 | 11.96 | 0.01 | 2.254 | 8.33 | 1.98 | 2.7 | 96.6 | 0.7 | -0.32 | 0.70 | 0.72 | 1.86 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.55 | 0.00 | 2.368 | 8.30 | 1.79 | 3.2 | 96.7 | 0.1 | 0.69 | 1.43 | 0.73 | 0.81 | 1.72 | 50434 | 6521 | 23 | 0 | 11 | 0 | 0 | logfile |
✔ | 8XL3 | 38436 | 2025-01-16 | 2023-12-25 | 3.02 | 3.27 | 3.23 | 3.3 | 0.010 | 1.02 | 0.0 | 0.06 | 11.38 | 0.01 | 2.212 | 7.86 | 1.54 | 2.8 | 96.6 | 0.6 | -0.58 | 0.62 | 0.72 | 1.78 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 15.13 | 0.00 | 2.312 | 6.95 | 1.64 | 3.1 | 96.8 | 0.1 | 0.55 | 0.96 | 0.64 | 0.80 | 2.19 | 54204 | 7050 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 8XL4 | 38437 | 2025-01-15 | 2023-12-25 | 3.38 | 3.69 | 3.57 | 3.6 | 0.010 | 1.05 | 0.0 | 0.06 | 11.96 | 0.01 | 2.254 | 8.33 | 1.98 | 2.7 | 96.6 | 0.7 | -0.32 | 0.70 | 0.72 | 1.86 | 3.6 | 0.005 | 0.71 | 0.0 | 0.05 | 14.70 | 0.00 | 2.371 | 9.49 | 2.13 | 4.0 | 95.9 | 0.1 | 0.28 | 0.97 | 0.74 | 0.82 | 1.80 | 50434 | 6521 | 23 | 0 | 11 | 0 | 0 | logfile |
✔ | 8XL6 | 38439 | 2024-12-26 | 2023-12-25 | 2.29 | 2.41 | 2.37 | 2.4 | 0.011 | 1.00 | 0.0 | 0.06 | 13.28 | 0.01 | 2.245 | 6.01 | 0.51 | 4.7 | 95.1 | 0.2 | -2.32 | 0.71 | 0.79 | 2.80 | 2.4 | 0.004 | 0.69 | 0.0 | 0.05 | 16.29 | 0.00 | 2.371 | 5.17 | 1.93 | 3.8 | 96.2 | 0.0 | 0.58 | 0.79 | 0.78 | 0.87 | 3.07 | 44612 | 5780 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 8XL4 | 38437 | 2024-11-19 | 2023-12-25 | 3.38 | 3.69 | 3.57 | 3.6 | 0.010 | 1.05 | 0.0 | 0.06 | 11.96 | 0.01 | 2.254 | 8.33 | 1.98 | 2.7 | 96.6 | 0.7 | -0.32 | 0.70 | 0.72 | 1.86 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.55 | 0.00 | 2.368 | 8.30 | 1.79 | 3.2 | 96.7 | 0.1 | 0.69 | 1.43 | 0.73 | 0.81 | 1.72 | 50434 | 6521 | 23 | 0 | 11 | 0 | 0 | logfile |
✔ | 8XKY | 38431 | 2025-05-16 | 2023-12-25 | 3.42 | 4.51 | 3.39 | 3.8 | 0.006 | 0.85 | 0.0 | 0.06 | 15.24 | 0.01 | 2.386 | 5.89 | 0.24 | 3.8 | 96.2 | 0.0 | 1.37 | 0.60 | 0.78 | 1.91 | 3.8 | 0.003 | 0.75 | 2.0 | 0.06 | 15.76 | 0.00 | 2.274 | 6.02 | 2.29 | 1.8 | 98.2 | 0.0 | 1.39 | 0.97 | 0.61 | 0.80 | 1.69 | 14928 | 968 | 10 | 0 | 0 | 0 | 7332 | logfile |
✔ | 8XKY | 38431 | 2025-01-20 | 2023-12-25 | 3.42 | 4.51 | 3.38 | 3.8 | 0.006 | 0.85 | 0.0 | 0.06 | 15.24 | 0.01 | 2.386 | 5.89 | 0.24 | 3.8 | 96.2 | 0.0 | 1.37 | 0.60 | 0.78 | 1.91 | 3.8 | 0.003 | 0.75 | 2.0 | 0.06 | 15.76 | 0.00 | 2.274 | 6.02 | 2.29 | 1.8 | 98.2 | 0.0 | 1.39 | 0.97 | 0.61 | 0.80 | 1.69 | 14928 | 968 | 10 | 0 | 0 | 0 | 7332 | logfile |
✔ | 8XKX | 38430 | 2025-06-13 | 2023-12-25 | 3.7 | 3.94 | 3.41 | 3.9 | 0.004 | 0.74 | 0.0 | 0.06 | 16.10 | 0.00 | 2.288 | 4.48 | 0.24 | 1.9 | 98.1 | 0.0 | 1.46 | 0.64 | 0.77 | 2.91 | 4.0 | 0.003 | 0.62 | 0.0 | 0.06 | 16.80 | 0.00 | 2.296 | 4.48 | 3.41 | 3.0 | 97.0 | 0.0 | 1.28 | 4.47 | 0.63 | 0.78 | 2.69 | 14858 | 958 | 10 | 0 | 0 | 0 | 7340 | logfile |
✔ | 8XKX | 38430 | 2025-01-20 | 2023-12-25 | 3.7 | 3.94 | 3.42 | 4.0 | 0.004 | 0.74 | 0.0 | 0.06 | 16.10 | 0.00 | 2.288 | 4.48 | 0.24 | 1.9 | 98.1 | 0.0 | 1.46 | 0.64 | 0.77 | 2.91 | 4.0 | 0.003 | 0.62 | 0.0 | 0.06 | 16.90 | 0.00 | 2.304 | 4.42 | 3.78 | 3.0 | 97.0 | 0.0 | 1.26 | 4.47 | 0.64 | 0.78 | 2.83 | 14858 | 958 | 10 | 0 | 0 | 0 | 7340 | logfile |