Table showing results for all available months

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VSZ	43512	2025-08-23	2024-01-25	3.07	3.28	3.18	3.3	0.003	0.66	0.0	0.05	19.65	0.00	2.233	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.003	0.70	0.0	0.05	18.02	0.00	2.327	8.11	4.27	2.5	97.2	0.3	0.03	1.26	0.66	0.80	2.03	13220	1580	15	0	25	0	0	logfile
✔	8VSZ	43512	2025-07-31	2024-01-25	3.07	3.28	3.18	3.3	0.003	0.66	0.0	0.05	19.65	0.00	2.233	10.74	0.00	2.9	96.8	0.3	-0.47	0.64	0.75	1.97	3.3	0.007	0.82	0.0	0.05	18.07	0.00	2.317	9.33	4.83	4.3	95.4	0.3	-0.27	1.26	0.67	0.82	2.23	13220	1580	15	0	25	0	0	logfile
✔	8RT8	19482	2025-01-17	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	3.4	0.004	0.66	0.0	0.04	14.96	0.00	2.407	9.71	1.69	1.9	98.1	0.0	0.47	0.75	0.79	0.89	2.25	55802	7184	46	0	0	0	0	logfile
✔	8RT8	19482	2024-12-29	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	3.4	0.006	0.72	0.0	0.04	15.07	0.00	2.393	10.93	1.81	2.2	97.8	0.0	0.36	0.78	0.79	0.89	2.32	55802	7184	46	0	0	0	0	logfile
✘	8Y2D	38851	2025-07-23	2024-01-25	2.8	2.99	2.86	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4189	528	2	0	4	4	0	logfile
✔	8VSV	43507	2025-08-26	2024-01-24	3.8	4.30	3.69	4.1	0.008	1.26	3.0	0.07	13.24	0.01	2.010	7.76	5.98	9.4	90.3	0.4	-2.24	0.72	0.82	2.20	4.1	0.003	0.76	0.0	0.05	14.63	0.01	2.222	11.14	4.66	8.9	91.0	0.1	-1.63	1.59	0.72	0.83	2.00	38222	5312	28	0	24	0	0	logfile
✔	8Y1G	38835	2025-08-25	2024-01-24	2.99	3.22	3.09	3.1	0.010	1.02	0.0	0.06	16.47	0.01	2.222	4.90	12.14	8.0	92.0	0.0	-4.04	0.66	0.67	2.48	3.1	0.005	0.72	0.0	0.05	15.36	0.01	2.420	6.23	3.64	7.0	93.0	0.0	-1.53	1.22	0.74	0.82	2.31	29541	3624	21	0	93	0	0	logfile
✔	8Y1G	38835	2025-05-27	2024-01-24	2.99	3.22	3.09	3.1	0.010	1.02	0.0	0.06	16.47	0.01	2.222	4.94	12.14	8.0	92.0	0.0	-4.04	0.66	0.67	2.48	3.1	0.004	0.66	0.0	0.05	15.25	0.01	2.408	5.85	4.10	5.8	94.2	0.0	-1.38	1.22	0.74	0.81	2.32	29541	3624	21	0	93	0	0	logfile
✔	8Y1G	38835	2025-06-25	2024-01-24	2.99	3.22	3.09	3.1	0.010	1.02	0.0	0.06	16.47	0.01	2.222	4.94	12.14	8.0	92.0	0.0	-4.04	0.66	0.67	2.48	3.1	0.003	0.74	0.0	0.04	15.31	0.00	2.346	5.39	3.51	4.9	95.1	0.0	-1.17	1.23	0.74	0.81	2.14	29541	3624	21	0	93	0	0	logfile
✔	8RSC	19476	2025-05-29	2024-01-24	3.6	3.11	4.02	3.3	0.003	0.64	0.0	0.04	15.63	0.00	1.995	6.21	0.11	7.0	92.9	0.0	-1.45	0.68	0.74	2.12	3.1	0.007	0.87	0.0	0.05	16.95	0.01	2.392	5.75	3.57	7.5	92.5	0.0	-1.29	1.64	0.70	0.77	1.68	31874	4457	12	0	10	0	0	logfile
✘	8RSC	19476	2025-06-27	2024-01-24	3.6	3.11	4.02	3.3	0.003	0.64	0.0	0.04	15.63	0.00	1.995	6.21	0.11	7.0	92.9	0.0	-1.45	0.68	0.74	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31874	4457	12	0	10	0	0	logfile
✔	8RSC	19476	2025-08-25	2024-01-24	3.6	3.11	4.02	3.3	0.003	0.64	0.0	0.04	15.63	0.00	1.995	6.21	0.11	7.0	92.9	0.0	-1.45	0.68	0.74	2.12	3.1	0.004	0.74	0.0	0.05	16.90	0.00	2.285	5.07	3.28	6.5	93.5	0.0	-0.78	1.64	0.69	0.76	1.56	31874	4457	12	0	10	0	0	logfile
✔	8RS9	19473	2025-05-28	2024-01-24	3.4	3.70	3.57	3.6	0.003	0.67	0.0	0.04	15.77	0.00	2.014	8.60	0.15	9.6	90.4	0.0	-1.80	0.75	0.75	1.54	3.5	0.003	0.68	0.0	0.04	16.96	0.00	2.533	7.81	3.54	7.6	92.4	0.0	-0.79	1.72	0.77	0.80	0.99	31359	4458	6	0	0	0	0	logfile
✔	8RS9	19473	2025-06-26	2024-01-24	3.4	3.70	3.57	3.6	0.003	0.67	0.0	0.04	15.77	0.00	2.014	8.60	0.15	9.6	90.4	0.0	-1.80	0.75	0.75	1.54	3.5	0.004	0.71	0.0	0.05	16.96	0.00	2.508	8.08	3.68	8.4	91.6	0.0	-1.04	1.48	0.77	0.80	0.95	31359	4458	6	0	0	0	0	logfile
✔	8RS9	19473	2025-08-25	2024-01-24	3.4	3.70	3.57	3.6	0.003	0.67	0.0	0.04	15.77	0.00	2.014	8.60	0.15	9.6	90.4	0.0	-1.80	0.75	0.75	1.54	3.5	0.004	0.71	0.0	0.05	16.79	0.00	2.529	8.23	2.85	9.0	91.0	0.0	-1.02	1.49	0.77	0.80	0.89	31359	4458	6	0	0	0	0	logfile
✔	8VSP	43501	2024-12-29	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.029	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.56	0.0	0.04	14.00	0.00	2.580	5.40	2.38	3.2	96.8	0.0	2.19	0.55	0.77	0.79	3.05	11388	1476	12	0	3	0	0	logfile
✔	8VSP	43501	2025-06-10	2024-01-24	3.12	2.30	3.10	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.066	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.56	0.0	0.04	13.90	0.01	2.572	5.76	2.98	3.3	96.7	0.0	2.07	0.54	0.78	0.80	3.32	11388	1476	12	0	3	0	0	logfile
✔	8VSP	43501	2025-08-23	2024-01-24	3.12	2.30	3.10	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.066	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.55	0.0	0.04	13.89	0.00	2.572	5.26	3.32	3.3	96.7	0.0	2.18	0.54	0.78	0.79	3.09	11388	1476	12	0	3	0	0	logfile
✔	8VSP	43501	2025-07-29	2024-01-24	3.12	2.30	3.10	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.066	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.56	0.0	0.04	13.90	0.01	2.572	5.76	2.98	3.3	96.7	0.0	2.07	0.54	0.78	0.80	3.32	11388	1476	12	0	3	0	0	logfile
✔	8VSP	43501	2025-01-17	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.029	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.54	0.0	0.04	14.05	0.00	2.568	5.26	2.72	2.9	97.1	0.0	2.08	1.37	0.78	0.79	3.04	11388	1476	12	0	3	0	0	logfile

• ← previous
• Page 688 of 5400
• next →