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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8VRW | 43488 | 2025-06-09 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.070 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.004 | 0.67 | 0.0 | 0.04 | 13.90 | 0.01 | 2.380 | 12.53 | 2.69 | 4.8 | 95.2 | 0.0 | -0.85 | 1.14 | 0.67 | 0.66 | 2.52 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VRW | 43488 | 2025-01-17 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.030 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.004 | 0.66 | 0.0 | 0.04 | 13.82 | 0.01 | 2.382 | 11.50 | 2.00 | 4.4 | 95.6 | 0.0 | -0.81 | 1.14 | 0.67 | 0.66 | 2.41 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VRW | 43488 | 2025-02-14 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.030 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.004 | 0.66 | 0.0 | 0.04 | 13.82 | 0.01 | 2.382 | 11.50 | 2.00 | 4.4 | 95.6 | 0.0 | -0.81 | 1.14 | 0.67 | 0.66 | 2.41 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VRW | 43488 | 2024-12-29 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.030 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.003 | 0.66 | 0.0 | 0.04 | 13.86 | 0.01 | 2.384 | 11.75 | 2.52 | 4.1 | 95.9 | 0.0 | -0.83 | 1.14 | 0.67 | 0.67 | 2.26 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VRW | 43488 | 2024-11-16 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.030 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.003 | 0.66 | 0.0 | 0.04 | 13.86 | 0.01 | 2.384 | 11.75 | 2.52 | 4.1 | 95.9 | 0.0 | -0.83 | 1.14 | 0.67 | 0.67 | 2.26 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VRW | 43488 | 2025-08-23 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.070 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.005 | 0.70 | 0.0 | 0.04 | 13.84 | 0.01 | 2.370 | 13.17 | 1.74 | 5.0 | 95.0 | 0.0 | -1.04 | 1.14 | 0.67 | 0.67 | 2.36 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VRW | 43488 | 2025-07-28 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.070 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.004 | 0.67 | 0.0 | 0.04 | 13.90 | 0.01 | 2.380 | 12.53 | 2.69 | 4.8 | 95.2 | 0.0 | -0.85 | 1.14 | 0.67 | 0.66 | 2.52 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8VRW | 43488 | 2025-05-13 | 2024-01-22 | 3.03 | 2.28 | 3.04 | 2.1 | 0.004 | 0.60 | 0.0 | 0.05 | 10.40 | 0.02 | 2.070 | 18.92 | 0.52 | 4.3 | 95.7 | 0.0 | -1.34 | 0.67 | 0.64 | 2.23 | 1.5 | 0.004 | 0.67 | 0.0 | 0.04 | 13.90 | 0.01 | 2.380 | 12.53 | 2.69 | 4.8 | 95.2 | 0.0 | -0.85 | 1.14 | 0.67 | 0.66 | 2.52 | 10413 | 1272 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8RR1 | 19453 | 2025-08-24 | 2024-01-22 | 2.93 | 3.64 | — | 3.3 | 0.003 | 0.59 | 0.0 | 0.05 | 17.67 | 0.00 | 1.976 | 5.76 | 0.13 | 2.5 | 97.4 | 0.1 | 0.95 | 0.85 | 0.80 | 3.06 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 17.43 | 0.00 | 1.976 | 4.20 | 1.03 | 2.2 | 97.7 | 0.1 | 1.49 | 0.31 | 0.87 | 0.90 | 2.98 | 16261 | 1922 | 9 | 76 | 3 | 0 | 0 | logfile |
✔ | 8RR1 | 19453 | 2025-05-17 | 2024-01-22 | 2.93 | 3.64 | — | 3.3 | 0.003 | 0.59 | 0.0 | 0.05 | 17.67 | 0.00 | 1.976 | 5.73 | 0.13 | 2.5 | 97.4 | 0.1 | 0.95 | 0.85 | 0.80 | 3.06 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 17.39 | 0.00 | 2.031 | 4.73 | 1.03 | 2.1 | 97.8 | 0.1 | 1.53 | 0.32 | 0.87 | 0.89 | 2.80 | 16261 | 1922 | 9 | 76 | 3 | 0 | 0 | logfile |
✔ | 8RR1 | 19453 | 2025-06-14 | 2024-01-22 | 2.93 | 3.64 | — | 3.3 | 0.003 | 0.59 | 0.0 | 0.05 | 17.67 | 0.00 | 1.976 | 5.73 | 0.13 | 2.5 | 97.4 | 0.1 | 0.95 | 0.85 | 0.80 | 3.06 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 17.42 | 0.00 | 2.028 | 4.45 | 1.28 | 2.2 | 97.8 | 0.1 | 1.47 | 0.32 | 0.86 | 0.89 | 2.91 | 16261 | 1922 | 9 | 76 | 3 | 0 | 0 | logfile |
✔ | 8Y0E | 38802 | 2025-08-25 | 2024-01-22 | 3.0 | 3.37 | 3.19 | 3.3 | 0.006 | 0.67 | 0.0 | 0.05 | 17.25 | 0.00 | 1.907 | 12.71 | 4.19 | 5.6 | 94.1 | 0.3 | -0.05 | 0.78 | 0.87 | 2.77 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 17.44 | 0.00 | 1.973 | 9.36 | 3.19 | 5.3 | 94.5 | 0.2 | 0.27 | 0.29 | 0.78 | 0.86 | 2.40 | 31248 | 3920 | 13 | 0 | 7 | 0 | 0 | logfile |
✔ | 8Y0E | 38802 | 2025-06-27 | 2024-01-22 | 3.0 | 3.37 | 3.19 | 3.3 | 0.006 | 0.67 | 0.0 | 0.05 | 17.25 | 0.00 | 1.907 | 12.72 | 4.19 | 5.6 | 94.1 | 0.3 | -0.05 | 0.78 | 0.87 | 2.77 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 17.38 | 0.00 | 1.987 | 9.90 | 3.30 | 5.1 | 94.6 | 0.3 | 0.19 | 0.29 | 0.78 | 0.86 | 2.42 | 31248 | 3920 | 13 | 0 | 7 | 0 | 0 | logfile |
✔ | 8Y0E | 38802 | 2025-05-28 | 2024-01-22 | 3.0 | 3.37 | 3.19 | 3.3 | 0.006 | 0.67 | 0.0 | 0.05 | 17.25 | 0.00 | 1.907 | 12.72 | 4.19 | 5.6 | 94.1 | 0.3 | -0.05 | 0.78 | 0.87 | 2.77 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 17.39 | 0.00 | 1.977 | 9.45 | 3.24 | 5.1 | 94.7 | 0.3 | 0.28 | 0.29 | 0.78 | 0.86 | 2.43 | 31248 | 3920 | 13 | 0 | 7 | 0 | 0 | logfile |
✘ | 8XZV | 38799 | 2024-12-29 | 2024-01-21 | 3.16 | 3.46 | 3.38 | 3.4 | 0.003 | 0.72 | 1.0 | 0.05 | 17.68 | 0.01 | 2.149 | 14.42 | 1.48 | 10.9 | 88.2 | 0.9 | -2.26 | 0.67 | 0.78 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58999 | 7497 | 20 | 0 | 1 | 0 | 0 | logfile |
✔ | 8XZV | 38799 | 2025-01-18 | 2024-01-21 | 3.16 | 3.46 | 3.38 | 3.4 | 0.003 | 0.72 | 1.0 | 0.05 | 17.68 | 0.01 | 2.149 | 14.42 | 1.48 | 10.9 | 88.2 | 0.9 | -2.26 | 0.67 | 0.78 | 1.63 | 3.4 | 0.005 | 0.71 | 1.0 | 0.05 | 17.98 | 0.01 | 1.911 | 12.01 | 3.55 | 11.8 | 87.7 | 0.5 | -2.00 | 0.35 | 0.65 | 0.78 | 1.60 | 58999 | 7497 | 20 | 0 | 1 | 0 | 0 | logfile |
✔ | 8XZG | 38795 | 2025-07-25 | 2024-01-21 | 3.2 | 3.59 | 3.31 | 3.6 | 0.008 | 1.02 | 0.0 | 0.06 | 14.04 | 0.00 | 2.173 | 9.19 | 1.56 | 6.1 | 93.8 | 0.1 | -2.72 | 0.62 | 0.77 | 2.19 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 15.87 | 0.00 | 2.524 | 4.42 | 2.46 | 3.4 | 96.6 | 0.0 | -0.02 | 0.43 | 0.56 | 0.75 | 1.53 | 7172 | 919 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XZG | 38795 | 2024-11-14 | 2024-01-21 | 3.2 | 3.59 | 3.31 | 3.6 | 0.008 | 0.88 | 0.0 | 0.06 | 14.04 | 0.00 | 2.173 | 9.19 | 1.56 | 6.1 | 93.8 | 0.1 | -2.72 | 0.62 | 0.77 | 2.19 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 15.96 | 0.00 | 2.428 | 4.14 | 2.85 | 2.9 | 97.1 | 0.0 | 0.14 | 0.43 | 0.57 | 0.76 | 1.51 | 7172 | 919 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XZG | 38795 | 2024-12-27 | 2024-01-21 | 3.2 | 3.59 | 3.31 | 3.6 | 0.008 | 0.88 | 0.0 | 0.06 | 14.04 | 0.00 | 2.173 | 9.19 | 1.56 | 6.1 | 93.8 | 0.1 | -2.72 | 0.62 | 0.77 | 2.19 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 15.96 | 0.00 | 2.428 | 4.14 | 2.85 | 2.9 | 97.1 | 0.0 | 0.14 | 0.43 | 0.57 | 0.76 | 1.51 | 7172 | 919 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8XZG | 38795 | 2025-01-14 | 2024-01-21 | 3.2 | 3.59 | 3.31 | 3.6 | 0.008 | 0.88 | 0.0 | 0.06 | 14.04 | 0.00 | 2.173 | 9.19 | 1.56 | 6.1 | 93.8 | 0.1 | -2.72 | 0.62 | 0.77 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7172 | 919 | 5 | 0 | 0 | 0 | 0 | logfile |