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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8RQ5 | 19434 | 2025-06-10 | 2024-01-17 | 2.32 | 2.49 | 2.38 | 2.5 | 0.012 | 1.37 | 0.0 | 0.08 | 14.56 | 0.01 | 2.284 | 5.83 | 3.01 | 1.5 | 98.5 | 0.0 | -0.73 | 0.71 | 0.91 | 6.00 | 2.5 | 0.003 | 0.51 | 0.0 | 0.04 | 15.03 | 0.00 | 2.228 | 5.63 | 1.24 | 1.4 | 98.6 | 0.0 | 3.44 | 0.90 | 0.70 | 0.90 | 4.98 | 12137 | 1340 | 15 | 0 | 85 | 352 | 0 | logfile |
✔ | 8RQ5 | 19434 | 2025-05-14 | 2024-01-17 | 2.32 | 2.49 | 2.38 | 2.5 | 0.012 | 1.37 | 0.0 | 0.08 | 14.56 | 0.01 | 2.284 | 5.83 | 3.01 | 1.5 | 98.5 | 0.0 | -0.73 | 0.71 | 0.91 | 6.00 | 2.5 | 0.003 | 0.51 | 0.0 | 0.04 | 15.03 | 0.00 | 2.235 | 5.50 | 1.15 | 1.4 | 98.6 | 0.0 | 3.47 | 0.90 | 0.70 | 0.89 | 4.98 | 12137 | 1340 | 15 | 0 | 85 | 352 | 0 | logfile |
✔ | 8XX7 | 38748 | 2025-06-13 | 2024-01-17 | 3.32 | 3.52 | 3.33 | 3.4 | 0.004 | 0.48 | 0.0 | 0.04 | 12.69 | 0.00 | 2.229 | 7.22 | 0.00 | 3.2 | 96.8 | 0.0 | 0.54 | 0.59 | 0.55 | 1.67 | 3.4 | 0.006 | 0.75 | 0.0 | 0.05 | 15.40 | 0.00 | 2.492 | 10.80 | 2.08 | 4.6 | 95.4 | 0.0 | 0.75 | 0.95 | 0.72 | 0.85 | 1.56 | 15054 | 1938 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XX4 | 38745 | 2025-06-24 | 2024-01-17 | 2.6 | 2.88 | 2.72 | 2.9 | 0.005 | 0.63 | 0.0 | 0.05 | 19.16 | 0.01 | 1.899 | 10.24 | 2.39 | 4.9 | 94.8 | 0.3 | -0.03 | 0.69 | 0.88 | 3.50 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 19.00 | 0.00 | 1.922 | 8.16 | 2.55 | 4.6 | 95.2 | 0.2 | 0.40 | 0.86 | 0.69 | 0.88 | 3.45 | 28685 | 3488 | 15 | 43 | 7 | 0 | 0 | logfile |
✔ | 8XX7 | 38748 | 2025-05-17 | 2024-01-17 | 3.32 | 3.52 | 3.33 | 3.4 | 0.004 | 0.48 | 0.0 | 0.04 | 12.69 | 0.00 | 2.229 | 7.22 | 0.00 | 3.2 | 96.8 | 0.0 | 0.54 | 0.59 | 0.55 | 1.67 | 3.4 | 0.004 | 0.69 | 0.0 | 0.04 | 15.42 | 0.00 | 2.500 | 9.44 | 1.65 | 3.8 | 96.2 | 0.0 | 1.01 | 0.94 | 0.72 | 0.84 | 1.59 | 15054 | 1938 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8XX4 | 38745 | 2025-08-25 | 2024-01-17 | 2.6 | 2.88 | 2.72 | 2.9 | 0.005 | 0.63 | 0.0 | 0.05 | 19.16 | 0.01 | 1.899 | 10.24 | 2.39 | 4.9 | 94.8 | 0.3 | -0.03 | 0.69 | 0.88 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28685 | 3488 | 15 | 43 | 7 | 0 | 0 | logfile |
✔ | 8XX4 | 38745 | 2025-05-26 | 2024-01-17 | 2.6 | 2.88 | 2.72 | 2.9 | 0.005 | 0.63 | 0.0 | 0.05 | 19.16 | 0.01 | 1.899 | 10.24 | 2.39 | 4.9 | 94.8 | 0.3 | -0.03 | 0.69 | 0.88 | 3.50 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 19.01 | 0.00 | 1.947 | 8.23 | 2.52 | 4.6 | 95.2 | 0.2 | 0.32 | 0.86 | 0.69 | 0.88 | 3.39 | 28685 | 3488 | 15 | 43 | 7 | 0 | 0 | logfile |
✔ | 8XX6 | 38747 | 2025-02-14 | 2024-01-17 | 2.99 | 3.23 | 3.12 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 12.90 | 0.00 | 2.229 | 4.30 | 0.00 | 3.3 | 96.7 | 0.0 | 0.68 | 0.73 | 0.82 | 2.56 | 3.2 | 0.003 | 0.78 | 0.0 | 0.04 | 15.87 | 0.00 | 2.312 | 8.50 | 1.98 | 4.0 | 96.0 | 0.0 | 0.61 | 1.69 | 0.74 | 0.85 | 2.81 | 9854 | 1278 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XX6 | 38747 | 2025-04-30 | 2024-01-17 | 2.99 | 3.23 | 3.11 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 12.90 | 0.00 | 2.229 | 4.30 | 0.00 | 3.3 | 96.7 | 0.0 | 0.68 | 0.73 | 0.82 | 2.56 | 3.2 | 0.004 | 0.78 | 0.0 | 0.04 | 15.98 | 0.00 | 2.437 | 8.29 | 2.64 | 3.7 | 96.3 | 0.0 | 0.52 | 1.33 | 0.74 | 0.85 | 2.71 | 9854 | 1278 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XX6 | 38747 | 2025-05-13 | 2024-01-17 | 2.99 | 3.23 | 3.11 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 12.90 | 0.00 | 2.229 | 4.30 | 0.00 | 3.3 | 96.7 | 0.0 | 0.68 | 0.73 | 0.82 | 2.56 | 3.2 | 0.003 | 0.77 | 0.0 | 0.04 | 15.85 | 0.00 | 2.295 | 8.29 | 2.26 | 3.5 | 96.5 | 0.0 | 0.74 | 1.32 | 0.73 | 0.85 | 2.65 | 9854 | 1278 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XX6 | 38747 | 2025-06-08 | 2024-01-17 | 2.99 | 3.23 | 3.11 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 12.90 | 0.00 | 2.229 | 4.30 | 0.00 | 3.3 | 96.7 | 0.0 | 0.68 | 0.73 | 0.82 | 2.56 | 3.2 | 0.004 | 0.78 | 0.0 | 0.04 | 15.98 | 0.00 | 2.437 | 8.29 | 2.64 | 3.7 | 96.3 | 0.0 | 0.52 | 1.33 | 0.74 | 0.85 | 2.71 | 9854 | 1278 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XX6 | 38747 | 2025-07-27 | 2024-01-17 | 2.99 | 3.23 | 3.11 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 12.90 | 0.00 | 2.229 | 4.30 | 0.00 | 3.3 | 96.7 | 0.0 | 0.68 | 0.73 | 0.82 | 2.56 | 3.2 | 0.004 | 0.78 | 0.0 | 0.04 | 15.98 | 0.00 | 2.437 | 8.29 | 2.64 | 3.7 | 96.3 | 0.0 | 0.52 | 1.33 | 0.74 | 0.85 | 2.71 | 9854 | 1278 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XX6 | 38747 | 2025-08-23 | 2024-01-17 | 2.99 | 3.23 | 3.11 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 12.90 | 0.00 | 2.229 | 4.20 | 0.00 | 3.3 | 96.7 | 0.0 | 0.68 | 0.73 | 0.82 | 2.56 | 3.2 | 0.003 | 0.81 | 0.0 | 0.04 | 16.04 | 0.00 | 2.188 | 8.29 | 2.74 | 3.9 | 96.1 | 0.0 | 0.57 | 1.34 | 0.74 | 0.85 | 2.66 | 9854 | 1278 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8RQ4 | 19433 | 2025-08-23 | 2024-01-17 | 3.45 | 3.84 | 3.57 | 3.8 | 0.007 | 0.72 | 0.0 | 0.05 | 18.58 | 0.00 | 2.209 | 10.93 | 0.64 | 4.5 | 95.5 | 0.0 | 1.28 | 0.61 | 0.78 | 1.01 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 18.49 | 0.00 | 2.530 | 7.71 | 4.67 | 3.8 | 96.2 | 0.0 | 1.96 | 1.30 | 0.64 | 0.84 | 1.01 | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8RQ4 | 19433 | 2025-01-17 | 2024-01-17 | 3.45 | 3.84 | 3.57 | 3.8 | 0.007 | 0.72 | 0.0 | 0.05 | 18.58 | 0.00 | 2.209 | 11.02 | 0.64 | 4.5 | 95.5 | 0.0 | 1.28 | 0.61 | 0.78 | 1.01 | 3.8 | 0.004 | 0.62 | 0.0 | 0.04 | 18.46 | 0.00 | 2.514 | 8.15 | 3.79 | 4.0 | 96.0 | 0.0 | 1.77 | 0.51 | 0.66 | 0.85 | 1.01 | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8RQ4 | 19433 | 2024-11-16 | 2024-01-17 | 3.45 | 3.84 | 3.57 | 3.8 | 0.007 | 0.72 | 0.0 | 0.05 | 18.58 | 0.00 | 2.209 | 11.02 | 0.64 | 4.5 | 95.5 | 0.0 | 1.28 | 0.61 | 0.78 | 1.01 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 18.48 | 0.00 | 2.516 | 8.15 | 3.71 | 3.9 | 96.1 | 0.0 | 1.88 | 0.75 | 0.64 | 0.84 | 1.09 | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8RQ4 | 19433 | 2025-05-14 | 2024-01-17 | 3.45 | 3.84 | 3.57 | 3.8 | 0.007 | 0.72 | 0.0 | 0.05 | 18.58 | 0.00 | 2.209 | 11.02 | 0.64 | 4.5 | 95.5 | 0.0 | 1.28 | 0.61 | 0.78 | 1.01 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 18.44 | 0.00 | 2.519 | 7.71 | 3.95 | 3.8 | 96.2 | 0.0 | 1.94 | 0.51 | 0.65 | 0.84 | 0.99 | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8RQ4 | 19433 | 2024-12-29 | 2024-01-17 | 3.45 | 3.84 | 3.57 | 3.8 | 0.007 | 0.72 | 0.0 | 0.05 | 18.58 | 0.00 | 2.209 | 11.02 | 0.64 | 4.5 | 95.5 | 0.0 | 1.28 | 0.61 | 0.78 | 1.01 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 18.48 | 0.00 | 2.516 | 8.15 | 3.71 | 3.9 | 96.1 | 0.0 | 1.88 | 0.75 | 0.64 | 0.84 | 1.09 | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8RQ4 | 19433 | 2025-06-10 | 2024-01-17 | 3.45 | 3.84 | 3.57 | 3.8 | 0.007 | 0.72 | 0.0 | 0.05 | 18.58 | 0.00 | 2.209 | 11.02 | 0.64 | 4.5 | 95.5 | 0.0 | 1.28 | 0.61 | 0.78 | 1.01 | 3.8 | 0.004 | 0.61 | 0.0 | 0.04 | 18.41 | 0.00 | 2.518 | 8.02 | 3.63 | 4.0 | 96.0 | 0.0 | 1.87 | 0.53 | 0.65 | 0.84 | 1.04 | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 8RQ4 | 19433 | 2025-07-29 | 2024-01-17 | 3.45 | 3.84 | 3.57 | 3.8 | 0.007 | 0.72 | 0.0 | 0.05 | 18.58 | 0.00 | 2.209 | 11.02 | 0.64 | 4.5 | 95.5 | 0.0 | 1.28 | 0.61 | 0.78 | 1.01 | 3.8 | 0.004 | 0.61 | 0.0 | 0.04 | 18.41 | 0.00 | 2.518 | 8.02 | 3.63 | 4.0 | 96.0 | 0.0 | 1.87 | 0.53 | 0.65 | 0.84 | 1.04 | 11210 | 1402 | 2 | 0 | 3 | 0 | 0 | logfile |