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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8V45 | 42965 | 2025-01-23 | 2023-11-28 | 3.63 | 4.32 | 3.75 | 3.9 | 0.005 | 0.75 | 0.0 | 0.05 | 12.90 | 0.01 | 2.257 | 4.34 | 5.65 | 2.3 | 97.7 | 0.0 | -1.11 | 0.84 | 0.78 | 1.39 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 14.23 | 0.00 | 2.386 | 9.16 | 2.70 | 2.1 | 97.9 | 0.0 | 1.59 | 1.54 | 0.86 | 0.82 | 1.21 | 19813 | 2485 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V45 | 42965 | 2025-05-20 | 2023-11-28 | 3.63 | 4.32 | 3.75 | 3.9 | 0.005 | 0.75 | 0.0 | 0.05 | 12.90 | 0.01 | 2.257 | 4.34 | 5.65 | 2.3 | 97.7 | 0.0 | -1.11 | 0.84 | 0.78 | 1.39 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 14.23 | 0.00 | 2.386 | 9.16 | 2.70 | 2.1 | 97.9 | 0.0 | 1.59 | 1.54 | 0.86 | 0.82 | 1.21 | 19813 | 2485 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V45 | 42965 | 2025-06-17 | 2023-11-28 | 3.63 | 4.32 | 3.75 | 3.9 | 0.005 | 0.75 | 0.0 | 0.05 | 12.90 | 0.01 | 2.257 | 4.34 | 5.65 | 2.3 | 97.7 | 0.0 | -1.11 | 0.84 | 0.78 | 1.39 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 14.26 | 0.00 | 2.564 | 8.72 | 2.08 | 1.9 | 98.1 | 0.0 | 1.64 | 1.55 | 0.85 | 0.81 | 1.17 | 19813 | 2485 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V45 | 42965 | 2024-10-15 | 2023-11-28 | 3.63 | 4.32 | 3.75 | 3.9 | 0.005 | 0.75 | 0.0 | 0.05 | 12.90 | 0.01 | 2.257 | 4.34 | 5.65 | 2.3 | 97.7 | 0.0 | -1.11 | 0.84 | 0.78 | 1.39 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 14.29 | 0.00 | 2.510 | 8.72 | 1.88 | 2.1 | 97.9 | 0.0 | 1.73 | 1.55 | 0.85 | 0.81 | 1.09 | 19813 | 2485 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V46 | 42966 | 2025-05-17 | 2023-11-28 | 3.09 | 3.67 | 3.19 | 3.5 | 0.004 | 0.59 | 0.0 | 0.05 | 11.45 | 0.00 | 2.079 | 3.85 | 2.58 | 2.1 | 97.9 | 0.0 | -0.32 | 0.78 | 0.81 | 2.75 | 3.5 | 0.005 | 0.58 | 0.0 | 0.04 | 13.52 | 0.00 | 1.928 | 6.23 | 1.23 | 2.1 | 97.9 | 0.0 | 1.94 | 0.67 | 0.80 | 0.86 | 2.47 | 15632 | 1937 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V46 | 42966 | 2025-06-14 | 2023-11-28 | 3.09 | 3.67 | 3.19 | 3.5 | 0.004 | 0.59 | 0.0 | 0.05 | 11.45 | 0.00 | 2.079 | 3.85 | 2.58 | 2.1 | 97.9 | 0.0 | -0.32 | 0.78 | 0.81 | 2.75 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 13.30 | 0.00 | 2.012 | 6.36 | 1.46 | 2.2 | 97.8 | 0.0 | 1.93 | 0.66 | 0.80 | 0.86 | 2.40 | 15632 | 1937 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V46 | 42966 | 2024-10-13 | 2023-11-28 | 3.09 | 3.67 | 3.19 | 3.5 | 0.004 | 0.59 | 0.0 | 0.05 | 11.45 | 0.00 | 2.079 | 3.85 | 2.58 | 2.1 | 97.9 | 0.0 | -0.32 | 0.78 | 0.81 | 2.75 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 13.39 | 0.00 | 1.983 | 6.90 | 1.46 | 1.9 | 98.1 | 0.0 | 1.61 | 0.68 | 0.79 | 0.85 | 2.33 | 15632 | 1937 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V46 | 42966 | 2024-11-18 | 2023-11-28 | 3.09 | 3.67 | 3.19 | 3.5 | 0.004 | 0.59 | 0.0 | 0.05 | 11.45 | 0.00 | 2.079 | 3.85 | 2.58 | 2.1 | 97.9 | 0.0 | -0.32 | 0.78 | 0.81 | 2.75 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 13.39 | 0.00 | 1.983 | 6.90 | 1.46 | 1.9 | 98.1 | 0.0 | 1.61 | 0.68 | 0.79 | 0.85 | 2.33 | 15632 | 1937 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V46 | 42966 | 2024-12-31 | 2023-11-28 | 3.09 | 3.67 | 3.19 | 3.5 | 0.004 | 0.59 | 0.0 | 0.05 | 11.45 | 0.00 | 2.079 | 3.85 | 2.58 | 2.1 | 97.9 | 0.0 | -0.32 | 0.78 | 0.81 | 2.75 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 13.39 | 0.00 | 1.983 | 6.90 | 1.46 | 1.9 | 98.1 | 0.0 | 1.61 | 0.68 | 0.79 | 0.85 | 2.33 | 15632 | 1937 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V46 | 42966 | 2025-01-20 | 2023-11-28 | 3.09 | 3.67 | 3.19 | 3.5 | 0.004 | 0.59 | 0.0 | 0.05 | 11.45 | 0.00 | 2.079 | 3.85 | 2.58 | 2.1 | 97.9 | 0.0 | -0.32 | 0.78 | 0.81 | 2.75 | 3.5 | 0.005 | 0.58 | 0.0 | 0.04 | 13.52 | 0.00 | 1.928 | 6.23 | 1.23 | 2.1 | 97.9 | 0.0 | 1.94 | 0.67 | 0.80 | 0.86 | 2.47 | 15632 | 1937 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V45 | 42965 | 2024-11-19 | 2023-11-28 | 3.63 | 4.32 | 3.75 | 3.9 | 0.005 | 0.75 | 0.0 | 0.05 | 12.90 | 0.01 | 2.257 | 4.34 | 5.65 | 2.3 | 97.7 | 0.0 | -1.11 | 0.84 | 0.78 | 1.39 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 14.29 | 0.00 | 2.510 | 8.72 | 1.88 | 2.1 | 97.9 | 0.0 | 1.73 | 1.55 | 0.85 | 0.81 | 1.09 | 19813 | 2485 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V47 | 42967 | 2025-01-23 | 2023-11-28 | 4.08 | 4.63 | 4.12 | 4.1 | 0.006 | 0.79 | 0.0 | 0.05 | 12.06 | 0.01 | 2.275 | 5.49 | 2.85 | 2.3 | 97.7 | 0.0 | -0.21 | 0.83 | 0.77 | — | 4.1 | 0.004 | 0.58 | 0.0 | 0.04 | 12.03 | 0.00 | 2.362 | 12.08 | 0.04 | 3.1 | 96.9 | 0.0 | 1.36 | 1.58 | 0.84 | 0.81 | — | 20580 | 2548 | 11 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V47 | 42967 | 2025-05-21 | 2023-11-28 | 4.08 | 4.63 | 4.12 | 4.1 | 0.006 | 0.79 | 0.0 | 0.05 | 12.06 | 0.01 | 2.275 | 5.49 | 2.85 | 2.3 | 97.7 | 0.0 | -0.21 | 0.83 | 0.77 | — | 4.1 | 0.004 | 0.58 | 0.0 | 0.04 | 12.03 | 0.00 | 2.362 | 12.08 | 0.04 | 3.1 | 96.9 | 0.0 | 1.36 | 1.58 | 0.84 | 0.81 | — | 20580 | 2548 | 11 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V47 | 42967 | 2025-06-18 | 2023-11-28 | 4.08 | 4.63 | 4.12 | 4.1 | 0.006 | 0.79 | 0.0 | 0.05 | 12.06 | 0.01 | 2.275 | 5.49 | 2.85 | 2.3 | 97.7 | 0.0 | -0.21 | 0.83 | 0.77 | — | 4.1 | 0.004 | 0.61 | 0.0 | 0.04 | 12.10 | 0.00 | 2.387 | 14.03 | 0.04 | 3.4 | 96.6 | 0.0 | 1.24 | 1.58 | 0.84 | 0.81 | — | 20580 | 2548 | 11 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V49 | 42969 | 2024-10-12 | 2023-11-28 | 3.62 | 4.40 | 3.75 | 3.8 | 0.003 | 0.80 | 0.0 | 0.05 | 12.61 | 0.01 | 2.306 | 5.13 | 3.08 | 4.8 | 95.2 | 0.0 | 0.10 | 0.77 | 0.77 | 1.50 | 3.9 | 0.004 | 0.68 | 0.0 | 0.04 | 14.91 | 0.00 | 2.447 | 13.34 | 1.72 | 3.5 | 96.5 | 0.0 | 1.25 | 2.99 | 0.78 | 0.81 | 1.42 | 12834 | 1586 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8V49 | 42969 | 2025-05-15 | 2023-11-28 | 3.62 | 4.40 | 3.75 | 3.8 | 0.003 | 0.80 | 0.0 | 0.05 | 12.61 | 0.01 | 2.306 | 5.13 | 3.08 | 4.8 | 95.2 | 0.0 | 0.10 | 0.77 | 0.77 | 1.50 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 14.81 | 0.00 | 2.443 | 12.60 | 2.94 | 2.9 | 97.1 | 0.0 | 1.46 | 2.98 | 0.78 | 0.81 | 1.35 | 12834 | 1586 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8V49 | 42969 | 2025-06-11 | 2023-11-28 | 3.62 | 4.40 | 3.75 | 3.8 | 0.003 | 0.80 | 0.0 | 0.05 | 12.61 | 0.01 | 2.306 | 5.13 | 3.08 | 4.8 | 95.2 | 0.0 | 0.10 | 0.77 | 0.77 | 1.50 | 3.9 | 0.002 | 0.64 | 0.0 | 0.04 | 14.66 | 0.00 | 2.495 | 9.82 | 2.08 | 2.3 | 97.7 | 0.0 | 1.66 | 2.98 | 0.78 | 0.80 | 1.39 | 12834 | 1586 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8V47 | 42967 | 2024-11-20 | 2023-11-28 | 4.08 | 4.63 | 4.12 | 4.1 | 0.006 | 0.79 | 0.0 | 0.05 | 12.06 | 0.01 | 2.275 | 5.49 | 2.85 | 2.3 | 97.7 | 0.0 | -0.21 | 0.83 | 0.77 | — | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 11.93 | 0.00 | 2.343 | 11.15 | 0.04 | 2.8 | 97.2 | 0.0 | 1.30 | 1.58 | 0.84 | 0.81 | — | 20580 | 2548 | 11 | 0 | 4 | 0 | 0 | logfile |
✔ | 8V48 | 42968 | 2025-05-24 | 2023-11-28 | 3.68 | 4.24 | 3.84 | 3.7 | 0.006 | 0.73 | 0.0 | 0.05 | 11.86 | 0.01 | 2.235 | 4.98 | 2.49 | 2.7 | 97.3 | 0.0 | -0.34 | 0.81 | 0.70 | 1.38 | 3.8 | 0.005 | 0.69 | 0.0 | 0.04 | 14.18 | 0.00 | 2.370 | 13.90 | 1.73 | 3.5 | 96.5 | 0.0 | 0.96 | 1.56 | 0.84 | 0.80 | 1.24 | 25334 | 3141 | 15 | 0 | 6 | 0 | 0 | logfile |
✔ | 8V48 | 42968 | 2025-06-21 | 2023-11-28 | 3.68 | 4.24 | 3.84 | 3.7 | 0.006 | 0.73 | 0.0 | 0.05 | 11.86 | 0.01 | 2.235 | 4.98 | 2.49 | 2.7 | 97.3 | 0.0 | -0.34 | 0.81 | 0.70 | 1.38 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 14.06 | 0.00 | 2.358 | 11.38 | 1.62 | 2.7 | 97.3 | 0.0 | 1.08 | 1.25 | 0.83 | 0.77 | 1.23 | 25334 | 3141 | 15 | 0 | 6 | 0 | 0 | logfile |