The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8X8M | 38149 | 2025-06-15 | 2023-11-27 | 2.37 | 2.78 | 2.36 | 2.7 | 0.002 | 0.49 | 0.0 | 0.04 | 14.22 | 0.00 | 2.178 | 2.38 | 1.48 | 4.1 | 95.9 | 0.0 | -0.91 | 0.77 | 0.90 | 5.32 | 2.6 | 0.004 | 0.58 | 0.0 | 0.05 | 14.44 | 0.00 | 2.142 | 1.75 | 1.74 | 5.8 | 94.2 | 0.0 | -0.91 | 0.21 | 0.82 | 0.93 | 5.67 | 17682 | 2325 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X8M | 38149 | 2025-05-18 | 2023-11-27 | 2.37 | 2.78 | 2.36 | 2.7 | 0.002 | 0.49 | 0.0 | 0.04 | 14.22 | 0.00 | 2.178 | 2.38 | 1.48 | 4.1 | 95.9 | 0.0 | -0.91 | 0.77 | 0.90 | 5.32 | 2.6 | 0.003 | 0.55 | 0.0 | 0.05 | 14.42 | 0.00 | 2.546 | 1.55 | 1.90 | 5.2 | 94.8 | 0.0 | -0.89 | 0.22 | 0.83 | 0.93 | 5.56 | 17682 | 2325 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X8M | 38149 | 2024-11-18 | 2023-11-27 | 2.37 | 2.78 | 2.36 | 2.7 | 0.002 | 0.49 | 0.0 | 0.04 | 14.22 | 0.00 | 2.178 | 2.38 | 1.48 | 4.1 | 95.9 | 0.0 | -0.91 | 0.77 | 0.90 | 5.32 | 2.7 | 0.003 | 0.53 | 0.0 | 0.05 | 14.39 | 0.00 | 2.475 | 1.78 | 1.74 | 5.0 | 95.0 | 0.0 | -0.88 | 0.21 | 0.83 | 0.93 | 5.52 | 17682 | 2325 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X8M | 38149 | 2024-10-14 | 2023-11-27 | 2.37 | 2.78 | 2.36 | 2.7 | 0.002 | 0.49 | 0.0 | 0.04 | 14.22 | 0.00 | 2.178 | 2.38 | 1.48 | 4.1 | 95.9 | 0.0 | -0.91 | 0.77 | 0.90 | 5.32 | 2.7 | 0.003 | 0.53 | 0.0 | 0.05 | 14.39 | 0.00 | 2.475 | 1.78 | 1.74 | 5.0 | 95.0 | 0.0 | -0.88 | 0.21 | 0.83 | 0.93 | 5.52 | 17682 | 2325 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8V3D | 42946 | 2025-06-21 | 2023-11-27 | 2.95 | 3.20 | 3.00 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 17.45 | 0.00 | 1.999 | 6.13 | 2.59 | 3.0 | 97.0 | 0.0 | 2.24 | 0.63 | 0.82 | 3.08 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 17.63 | 0.00 | 2.368 | 4.53 | 3.38 | 2.4 | 97.6 | 0.0 | 2.63 | 0.28 | 0.63 | 0.82 | 2.82 | 25637 | 1578 | 5 | 0 | 1 | 0 | 13001 | logfile |
✔ | 8V3D | 42946 | 2025-05-24 | 2023-11-27 | 2.95 | 3.20 | 3.00 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 17.45 | 0.00 | 1.999 | 6.13 | 2.59 | 3.0 | 97.0 | 0.0 | 2.24 | 0.63 | 0.82 | 3.08 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 17.61 | 0.00 | 2.382 | 4.49 | 2.81 | 2.4 | 97.6 | 0.0 | 2.84 | 0.28 | 0.63 | 0.82 | 2.78 | 25637 | 1578 | 5 | 0 | 1 | 0 | 13001 | logfile |
✔ | 8X80 | 38131 | 2025-06-19 | 2023-11-27 | 3.88 | 2.96 | 3.92 | 2.0 | 0.003 | 0.76 | 0.0 | 0.05 | 18.70 | 0.00 | 2.093 | 15.51 | 0.72 | 4.1 | 95.7 | 0.1 | -0.19 | 0.68 | 0.62 | 0.95 | 2.0 | 0.004 | 0.78 | 0.0 | 0.05 | 18.14 | 0.00 | 2.464 | 15.69 | 5.18 | 4.9 | 95.0 | 0.1 | -0.39 | 0.44 | 0.67 | 0.58 | 0.98 | 21890 | 2694 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 8X80 | 38131 | 2025-05-21 | 2023-11-27 | 3.88 | 2.96 | 3.92 | 2.0 | 0.003 | 0.76 | 0.0 | 0.05 | 18.70 | 0.00 | 2.093 | 15.51 | 0.72 | 4.1 | 95.7 | 0.1 | -0.19 | 0.68 | 0.62 | 0.95 | 2.0 | 0.003 | 0.76 | 0.0 | 0.05 | 18.13 | 0.00 | 2.469 | 14.25 | 4.82 | 4.4 | 95.4 | 0.1 | -0.33 | 0.43 | 0.67 | 0.58 | 0.88 | 21890 | 2694 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 8R7P | 18987 | 2025-06-28 | 2023-11-27 | 2.53 | 2.22 | 2.47 | 2.5 | 0.003 | 0.46 | 0.0 | 0.04 | 14.57 | 0.00 | 2.469 | 2.82 | 0.59 | 1.4 | 98.6 | 0.0 | 4.48 | 0.33 | 0.64 | 4.41 | 2.5 | 0.004 | 0.54 | 0.0 | 0.04 | 14.70 | 0.00 | 2.468 | 2.26 | 0.75 | 1.3 | 98.7 | 0.0 | 3.56 | 0.46 | 0.60 | 0.86 | 4.62 | 33726 | 2076 | 24 | 0 | 0 | 90 | 16908 | logfile |
✔ | 8R7P | 18987 | 2025-05-30 | 2023-11-27 | 2.53 | 2.22 | 2.47 | 2.5 | 0.003 | 0.46 | 0.0 | 0.04 | 14.57 | 0.00 | 2.469 | 2.82 | 0.59 | 1.4 | 98.6 | 0.0 | 4.48 | 0.33 | 0.64 | 4.41 | 2.5 | 0.002 | 0.49 | 0.0 | 0.04 | 14.70 | 0.00 | 2.511 | 2.26 | 0.80 | 1.0 | 99.0 | 0.0 | 3.68 | 0.48 | 0.60 | 0.86 | 4.65 | 33726 | 2076 | 24 | 0 | 0 | 90 | 16908 | logfile |
✔ | 8X80 | 38131 | 2025-01-24 | 2023-11-27 | 3.88 | 2.96 | 3.92 | 2.0 | 0.003 | 0.72 | 0.0 | 0.05 | 18.70 | 0.00 | 2.093 | 15.51 | 0.72 | 4.1 | 95.7 | 0.1 | -0.19 | 0.68 | 0.62 | 0.95 | 2.0 | 0.004 | 0.77 | 0.0 | 0.05 | 18.22 | 0.00 | 2.462 | 16.20 | 5.18 | 4.9 | 94.8 | 0.2 | -0.44 | 0.46 | 0.69 | 0.63 | 0.85 | 21890 | 2694 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 8X85 | 38136 | 2025-05-16 | 2023-11-27 | 3.58 | 2.69 | 3.57 | 2.2 | 0.004 | 0.79 | 0.0 | 0.05 | 13.70 | 0.01 | 2.110 | 12.72 | 0.18 | 6.6 | 93.1 | 0.3 | -1.14 | 0.70 | 0.69 | 1.67 | 2.1 | 0.004 | 0.77 | 0.0 | 0.05 | 14.82 | 0.00 | 2.442 | 10.95 | 2.47 | 6.3 | 93.4 | 0.2 | -0.89 | 0.50 | 0.68 | 0.66 | 1.69 | 14490 | 1782 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 8X85 | 38136 | 2025-01-20 | 2023-11-27 | 3.58 | 2.69 | 3.57 | 2.2 | 0.004 | 0.78 | 0.0 | 0.05 | 13.70 | 0.01 | 2.110 | 12.72 | 0.18 | 6.6 | 93.1 | 0.3 | -1.14 | 0.70 | 0.69 | 1.67 | 2.2 | 0.003 | 0.80 | 1.0 | 0.05 | 15.02 | 0.00 | 2.482 | 11.33 | 2.47 | 5.6 | 94.1 | 0.3 | -0.85 | 0.50 | 0.68 | 0.66 | 1.76 | 14490 | 1782 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 8X85 | 38136 | 2024-12-31 | 2023-11-27 | 3.58 | 2.69 | 3.57 | 2.2 | 0.004 | 0.78 | 0.0 | 0.05 | 13.70 | 0.01 | 2.110 | 12.72 | 0.18 | 6.6 | 93.1 | 0.3 | -1.14 | 0.70 | 0.69 | 1.67 | 2.1 | 0.004 | 0.81 | 0.0 | 0.05 | 14.86 | 0.00 | 2.439 | 11.75 | 2.47 | 6.5 | 93.3 | 0.3 | -0.97 | 0.51 | 0.68 | 0.66 | 1.62 | 14490 | 1782 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 8X85 | 38136 | 2025-06-13 | 2023-11-27 | 3.58 | 2.69 | 3.57 | 2.2 | 0.004 | 0.79 | 0.0 | 0.05 | 13.70 | 0.01 | 2.110 | 12.72 | 0.18 | 6.6 | 93.1 | 0.3 | -1.14 | 0.70 | 0.69 | 1.67 | 2.2 | 0.003 | 0.78 | 0.0 | 0.05 | 14.82 | 0.00 | 2.481 | 9.64 | 2.11 | 5.2 | 94.6 | 0.2 | -0.77 | 0.50 | 0.68 | 0.65 | 1.67 | 14490 | 1782 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 8X85 | 38136 | 2024-10-13 | 2023-11-27 | 3.58 | 2.69 | 3.57 | 2.2 | 0.004 | 0.78 | 0.0 | 0.05 | 13.70 | 0.01 | 2.110 | 12.72 | 0.18 | 6.6 | 93.1 | 0.3 | -1.14 | 0.70 | 0.69 | 1.67 | 2.1 | 0.004 | 0.81 | 0.0 | 0.05 | 14.86 | 0.00 | 2.439 | 11.75 | 2.47 | 6.5 | 93.3 | 0.3 | -0.97 | 0.51 | 0.68 | 0.66 | 1.62 | 14490 | 1782 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 8X85 | 38136 | 2024-11-17 | 2023-11-27 | 3.58 | 2.69 | 3.57 | 2.2 | 0.004 | 0.78 | 0.0 | 0.05 | 13.70 | 0.01 | 2.110 | 12.72 | 0.18 | 6.6 | 93.1 | 0.3 | -1.14 | 0.70 | 0.69 | 1.67 | 2.1 | 0.004 | 0.81 | 0.0 | 0.05 | 14.86 | 0.00 | 2.439 | 11.75 | 2.47 | 6.5 | 93.3 | 0.3 | -0.97 | 0.51 | 0.68 | 0.66 | 1.62 | 14490 | 1782 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 8X8L | 38148 | 2024-10-14 | 2023-11-27 | 2.7 | 2.58 | 2.91 | 2.9 | 0.004 | 0.60 | 1.0 | 0.05 | 9.65 | 0.00 | 2.091 | 5.91 | 1.89 | 2.6 | 97.4 | 0.0 | 2.09 | 0.57 | 0.76 | 3.42 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.75 | 0.00 | 2.222 | 5.40 | 1.58 | 3.9 | 96.1 | 0.0 | 1.47 | 1.15 | 0.59 | 0.84 | 3.78 | 17555 | 1140 | 6 | 0 | 0 | 0 | 8704 | logfile |
✔ | 8X8L | 38148 | 2024-11-18 | 2023-11-27 | 2.7 | 2.58 | 2.91 | 2.9 | 0.004 | 0.60 | 1.0 | 0.05 | 9.65 | 0.00 | 2.091 | 5.91 | 1.89 | 2.6 | 97.4 | 0.0 | 2.09 | 0.57 | 0.76 | 3.42 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.75 | 0.00 | 2.222 | 5.40 | 1.58 | 3.9 | 96.1 | 0.0 | 1.47 | 1.15 | 0.59 | 0.84 | 3.78 | 17555 | 1140 | 6 | 0 | 0 | 0 | 8704 | logfile |
✔ | 8X8L | 38148 | 2025-06-15 | 2023-11-27 | 2.7 | 2.58 | 2.91 | 2.9 | 0.004 | 0.60 | 1.0 | 0.05 | 9.65 | 0.00 | 2.091 | 5.91 | 1.89 | 2.6 | 97.4 | 0.0 | 2.09 | 0.57 | 0.76 | 3.42 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 15.91 | 0.00 | 2.213 | 5.06 | 1.89 | 4.4 | 95.6 | 0.0 | 1.31 | 1.14 | 0.59 | 0.84 | 3.91 | 17555 | 1140 | 6 | 0 | 0 | 0 | 8704 | logfile |