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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8R8U | 19011 | 2025-01-17 | 2023-11-30 | 3.1 | 3.24 | 3.12 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 16.32 | 0.00 | 1.792 | 4.52 | 0.00 | 2.4 | 97.6 | 0.0 | 0.37 | 0.75 | 0.86 | 3.03 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 16.70 | 0.00 | 2.231 | 3.77 | 2.89 | 2.1 | 97.9 | 0.0 | 0.37 | 1.91 | 0.74 | 0.86 | 2.94 | 10140 | 1280 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8R8U | 19011 | 2025-02-14 | 2023-11-30 | 3.1 | 3.24 | 3.12 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 16.32 | 0.00 | 1.792 | 4.52 | 0.00 | 2.4 | 97.6 | 0.0 | 0.37 | 0.75 | 0.86 | 3.03 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 16.70 | 0.00 | 2.231 | 3.77 | 2.89 | 2.1 | 97.9 | 0.0 | 0.37 | 1.91 | 0.74 | 0.86 | 2.94 | 10140 | 1280 | 6 | 0 | 12 | 0 | 0 | logfile |
✘ | 8R8U | 19011 | 2025-05-13 | 2023-11-30 | 3.1 | 3.24 | 3.12 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 16.32 | 0.00 | 1.792 | 4.52 | 0.00 | 2.4 | 97.6 | 0.0 | 0.37 | 0.75 | 0.86 | 3.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1280 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8R9V | 19013 | 2025-01-20 | 2023-11-30 | 4.4 | 2.81 | 4.31 | 3.9 | 0.013 | 1.69 | 1.0 | 0.10 | 14.89 | 0.01 | 1.324 | 17.12 | 0.25 | 4.3 | 95.3 | 0.3 | -2.00 | 0.64 | 0.65 | — | 1.8 | 0.003 | 0.81 | 0.0 | 0.05 | 14.11 | 0.00 | 1.852 | 12.71 | 0.00 | 3.2 | 96.7 | 0.1 | -0.01 | 1.24 | 0.68 | 0.72 | — | 14851 | 1857 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 8X9o | 38177 | 2025-06-13 | 2023-11-30 | 3.06 | 3.27 | 3.11 | 1.6 | 0.007 | 0.93 | 0.0 | 0.05 | 26.32 | 0.01 | 2.168 | 7.27 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.90 | — | 1.6 | 0.007 | 0.82 | 0.0 | 0.04 | 26.09 | 0.01 | 2.020 | 14.34 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.36 | 0.95 | 0.91 | — | 16201 | 0 | 2 | 751 | 33 | 8 | 0 | logfile |
✔ | 8X9o | 38177 | 2025-08-23 | 2023-11-30 | 3.06 | 3.27 | 3.11 | 1.6 | 0.007 | 0.93 | 0.0 | 0.05 | 26.32 | 0.01 | 2.168 | 7.27 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.90 | — | 1.6 | 0.007 | 0.80 | 0.0 | 0.04 | 26.08 | 0.01 | 2.016 | 13.64 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.31 | 0.95 | 0.90 | — | 16201 | 0 | 2 | 751 | 33 | 8 | 0 | logfile |
✔ | 8X9o | 38177 | 2025-05-17 | 2023-11-30 | 3.06 | 3.27 | 3.11 | 1.6 | 0.007 | 0.93 | 0.0 | 0.05 | 26.32 | 0.01 | 2.168 | 7.27 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.90 | — | 1.6 | 0.007 | 0.82 | 0.0 | 0.04 | 26.09 | 0.01 | 2.020 | 14.34 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.36 | 0.95 | 0.91 | — | 16201 | 0 | 2 | 751 | 33 | 8 | 0 | logfile |
✔ | 8V5K | 42983 | 2025-06-16 | 2023-11-30 | 2.6 | 2.12 | 2.76 | 1.9 | 0.007 | 0.75 | 0.0 | 0.05 | 11.79 | 0.01 | 2.217 | 3.64 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.79 | 0.79 | 4.83 | 1.9 | 0.004 | 0.67 | 0.0 | 0.05 | 15.25 | 0.00 | 2.325 | 5.92 | 1.66 | 1.7 | 98.3 | 0.0 | 1.40 | 0.40 | 0.80 | 0.82 | 3.62 | 15336 | 1980 | 12 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V5K | 42983 | 2025-08-24 | 2023-11-30 | 2.6 | 2.12 | 2.76 | 1.9 | 0.007 | 0.75 | 0.0 | 0.05 | 11.79 | 0.01 | 2.217 | 3.64 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.79 | 0.79 | 4.83 | 1.9 | 0.003 | 0.65 | 0.0 | 0.04 | 15.23 | 0.00 | 2.322 | 5.50 | 2.13 | 1.6 | 98.4 | 0.0 | 1.36 | 0.41 | 0.80 | 0.82 | 3.66 | 15336 | 1980 | 12 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V5K | 42983 | 2025-01-22 | 2023-11-30 | 2.6 | 2.12 | 2.76 | 1.9 | 0.007 | 0.75 | 0.0 | 0.05 | 11.79 | 0.01 | 2.217 | 3.64 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.79 | 0.79 | 4.83 | 1.9 | 0.004 | 0.64 | 0.0 | 0.05 | 15.20 | 0.00 | 2.332 | 5.56 | 2.13 | 1.4 | 98.6 | 0.0 | 1.44 | 0.41 | 0.80 | 0.82 | 3.59 | 15336 | 1980 | 12 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V5K | 42983 | 2024-11-19 | 2023-11-30 | 2.6 | 2.12 | 2.76 | 1.9 | 0.007 | 0.75 | 0.0 | 0.05 | 11.79 | 0.01 | 2.217 | 3.64 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.79 | 0.79 | 4.83 | 1.9 | 0.003 | 0.63 | 0.0 | 0.04 | 15.28 | 0.00 | 2.517 | 5.66 | 1.66 | 1.4 | 98.6 | 0.0 | 1.49 | 0.42 | 0.80 | 0.82 | 3.57 | 15336 | 1980 | 12 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V5K | 42983 | 2025-05-19 | 2023-11-30 | 2.6 | 2.12 | 2.76 | 1.9 | 0.007 | 0.75 | 0.0 | 0.05 | 11.79 | 0.01 | 2.217 | 3.64 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.79 | 0.79 | 4.83 | 1.9 | 0.004 | 0.66 | 0.0 | 0.05 | 15.23 | 0.00 | 2.326 | 5.69 | 1.95 | 1.4 | 98.6 | 0.0 | 1.45 | 0.41 | 0.80 | 0.82 | 3.59 | 15336 | 1980 | 12 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-05-11 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 6.05 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.4 | 0.005 | 0.69 | 0.0 | 0.05 | 15.70 | 0.00 | 2.475 | 8.22 | 2.63 | 5.9 | 94.1 | 0.0 | 0.11 | 2.03 | 0.86 | 0.85 | 3.52 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-01-14 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 6.05 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.5 | 0.003 | 0.65 | 0.0 | 0.05 | 15.59 | 0.00 | 2.481 | 7.27 | 2.63 | 5.3 | 94.7 | 0.0 | 0.24 | 2.03 | 0.85 | 0.85 | 3.76 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-02-12 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 6.05 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.5 | 0.003 | 0.65 | 0.0 | 0.05 | 15.59 | 0.00 | 2.481 | 7.27 | 2.63 | 5.3 | 94.7 | 0.0 | 0.24 | 2.03 | 0.85 | 0.85 | 3.76 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-03-12 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 6.05 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.5 | 0.004 | 0.66 | 0.0 | 0.05 | 15.71 | 0.00 | 2.474 | 7.54 | 2.51 | 5.1 | 94.9 | 0.0 | 0.16 | 1.12 | 0.85 | 0.85 | 3.71 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-04-28 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 6.05 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.5 | 0.004 | 0.66 | 0.0 | 0.05 | 15.79 | 0.00 | 2.487 | 7.61 | 2.75 | 5.8 | 94.2 | 0.0 | 0.15 | 2.03 | 0.85 | 0.85 | 3.61 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-06-06 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 6.05 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.5 | 0.004 | 0.66 | 0.0 | 0.05 | 15.79 | 0.00 | 2.487 | 7.61 | 2.75 | 5.8 | 94.2 | 0.0 | 0.15 | 2.03 | 0.85 | 0.85 | 3.61 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-07-25 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 6.05 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.5 | 0.004 | 0.66 | 0.0 | 0.05 | 15.79 | 0.00 | 2.487 | 7.61 | 2.75 | 5.8 | 94.2 | 0.0 | 0.15 | 2.03 | 0.85 | 0.85 | 3.61 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-08-22 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 5.98 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.5 | 0.003 | 0.64 | 0.0 | 0.05 | 15.59 | 0.00 | 2.488 | 7.54 | 2.87 | 5.4 | 94.6 | 0.0 | 0.21 | 1.13 | 0.85 | 0.84 | 3.75 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |