Table showing results for January 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C01	16349	2023-01-24	2022-12-15	2.7	3.36	—	2.7	0.009	0.86	0.0	0.06	15.20	0.01	2.038	3.16	0.79	3.5	96.2	0.3	-0.87	0.89	0.91	4.37	2.8	0.003	0.61	0.0	0.04	15.22	0.00	1.979	4.86	1.36	3.5	96.4	0.1	0.76	1.08	0.89	0.90	3.09	72685	5115	32	1545	1	0	0	logfile
✔	8C00	16347	2023-01-20	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	14.52	0.01	2.091	3.39	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.003	0.63	0.0	0.04	14.64	0.00	2.140	6.51	1.31	3.1	96.8	0.1	0.49	1.10	0.88	0.89	2.77	63117	4186	26	1425	0	0	0	logfile
✔	8F7X	28912	2023-01-19	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	3.04	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.3	0.003	0.61	0.0	0.04	14.55	0.00	2.042	6.64	0.62	2.0	98.0	0.0	1.46	1.10	0.62	0.85	2.47	8902	1145	6	0	0	0	0	logfile
✔	8F7W	28911	2023-01-19	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.06	0.01	2.282	4.18	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.003	0.58	0.0	0.04	13.69	0.00	2.162	8.68	0.00	2.1	97.9	0.0	0.69	1.23	0.60	0.81	2.39	9087	1145	7	0	5	0	0	logfile
✔	8F7Q	28907	2023-01-20	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.03	0.01	2.262	3.47	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.53	0.0	0.04	12.74	0.00	2.135	5.91	0.23	1.8	98.2	0.0	2.02	0.66	0.64	0.83	2.76	11994	1484	11	0	10	0	0	logfile
✔	8F7R	28908	2023-01-20	2022-11-20	3.28	2.92	3.26	3.4	0.004	0.84	0.0	0.07	7.82	0.01	2.260	4.28	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.3	0.003	0.56	0.0	0.04	14.02	0.00	2.165	11.66	0.24	1.3	98.7	0.0	1.41	0.81	0.57	0.79	2.34	11697	1443	11	0	12	0	0	logfile
✔	8F7S	28909	2023-01-20	2022-11-20	3.0	2.55	2.85	3.0	0.005	0.87	2.0	0.06	8.35	0.01	2.290	3.78	0.00	1.6	98.4	0.0	1.29	0.56	0.77	3.32	2.8	0.003	0.60	2.0	0.04	14.67	0.00	2.107	5.79	1.70	2.2	97.8	0.0	1.91	1.38	0.60	0.83	3.00	9975	1225	10	0	21	0	0	logfile
✘	8F6C	28879	2023-01-23	2022-11-16	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19344	2396	12	0	12	0	0	logfile
✘	8F68	28877	2023-01-20	2022-11-16	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9666	1198	6	0	6	0	0	logfile
✔	8HG1	34731	2023-01-22	2022-11-13	2.8	2.33	2.94	2.1	0.004	0.67	0.0	0.04	15.21	0.00	2.100	5.95	0.13	5.0	94.7	0.3	0.19	0.79	0.79	3.89	2.1	0.003	0.60	0.0	0.04	17.61	0.00	2.184	7.02	1.39	4.7	95.1	0.2	0.39	0.95	0.81	0.82	3.39	14155	1642	6	36	2	0	0	logfile
✔	8F4N	28855	2023-01-22	2022-11-11	2.95	3.15	3.04	3.2	0.004	0.55	0.0	0.04	9.96	0.00	2.278	8.28	2.12	1.9	98.1	0.0	2.00	0.72	0.80	3.23	3.2	0.003	0.54	0.0	0.04	15.74	0.00	2.085	9.21	2.18	1.4	98.6	0.0	2.01	1.26	0.69	0.85	2.77	15574	2043	2	0	0	0	0	logfile
✔	8F56	28861	2023-01-22	2022-11-11	2.98	3.18	3.09	3.2	0.004	0.56	0.0	0.04	9.89	0.00	2.200	9.91	2.64	2.2	97.8	0.0	1.81	0.68	0.75	1.96	3.2	0.003	0.58	0.0	0.04	16.16	0.00	2.177	10.36	3.00	1.8	98.2	0.0	1.79	1.29	0.70	0.86	2.19	15631	2039	2	0	0	0	0	logfile
✔	8F4R	28857	2023-01-25	2022-11-11	3.06	3.36	3.18	3.3	0.004	0.56	0.0	0.04	10.45	0.00	2.212	7.54	3.22	1.2	98.7	0.0	1.85	0.75	0.81	2.80	3.3	0.003	0.52	0.0	0.04	14.45	0.00	2.078	7.73	0.28	1.2	98.8	0.0	1.93	1.23	0.72	0.87	2.65	23675	3097	4	0	1	0	0	logfile
✔	8F3E	28848	2023-01-24	2022-11-10	3.09	3.38	3.21	3.4	0.003	0.52	0.0	0.04	9.85	0.00	2.213	7.20	2.91	1.9	98.1	0.0	1.77	0.61	0.64	1.05	3.4	0.003	0.59	0.0	0.04	15.62	0.00	2.070	10.11	0.40	1.8	98.2	0.0	1.68	1.75	0.63	0.80	1.92	23627	3095	3	0	0	0	0	logfile
✔	8F0U	28781	2023-01-26	2022-11-04	3.1	3.37	3.22	3.6	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.65	0.00	0.8	99.2	0.0	0.72	0.29	0.30	0.87	3.5	0.005	0.66	0.0	0.05	13.88	0.00	1.946	7.45	0.12	6.2	93.8	0.0	-0.73	0.99	0.50	0.66	1.64	78260	5252	39	0	0	0	39819	logfile
✘	8F0A	28754	2023-01-23	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✔	8EZ0	28725	2023-01-23	2022-10-29	3.7	4.09	3.78	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.83	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.014	0.72	0.0	0.04	16.52	0.01	2.158	14.08	0.24	7.3	92.7	0.0	-1.49	1.15	0.84	0.82	1.91	14640	1815	6	0	0	0	0	logfile
✔	8EYY	28724	2023-01-23	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.23	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.002	0.57	0.0	0.04	13.19	0.00	2.184	20.55	0.00	6.9	93.1	0.1	-1.01	1.12	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	8EYX	28723	2023-01-23	2022-10-29	4.5	4.99	4.61	4.1	0.006	0.76	1.0	0.05	12.87	0.00	1.857	34.13	1.18	9.7	89.7	0.6	-1.73	0.86	0.74	—	4.1	0.004	0.68	0.0	0.04	12.85	0.00	2.136	23.89	0.06	9.1	90.7	0.2	-1.42	1.18	0.89	0.83	—	14298	1773	6	0	0	0	0	logfile
✔	8EYR	28693	2023-01-21	2022-10-28	4.0	4.25	4.10	4.0	0.005	0.75	0.0	0.05	17.46	0.01	2.099	23.70	0.27	11.5	88.3	0.2	-2.62	0.86	0.82	—	4.0	0.003	0.68	0.0	0.05	17.64	0.00	2.154	19.33	0.67	9.4	90.5	0.2	-2.08	0.42	0.86	0.81	—	13635	1705	4	0	0	0	0	logfile

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