Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CA0	45378	2025-01-14	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.004	0.57	0.0	0.04	17.42	0.00	2.535	5.87	2.85	4.0	96.0	0.0	-0.51	0.35	0.79	0.81	1.55	6265	773	5	10	1	0	0	logfile
✔	9CA1	45379	2025-01-14	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.58	0.0	0.04	17.56	0.00	2.102	5.55	3.45	4.0	96.0	0.0	0.28	0.31	0.78	0.82	1.66	6265	773	5	10	2	0	0	logfile
✔	8ZXP	60548	2025-01-18	2024-06-14	3.09	3.32	3.14	3.5	0.005	0.98	0.0	0.05	16.93	0.01	2.297	4.76	0.41	5.2	94.8	0.0	-1.54	0.59	0.80	2.09	3.5	0.003	0.61	0.0	0.04	16.90	0.00	2.603	8.14	3.69	3.7	96.3	0.0	2.01	0.34	0.59	0.80	1.93	11586	1482	6	0	3	0	0	logfile
✔	8ZXD	60540	2025-01-23	2024-06-14	2.9	3.66	3.09	3.6	0.002	0.41	0.0	0.03	12.72	0.00	2.255	5.31	0.00	2.1	97.9	0.0	2.78	0.54	0.70	1.63	3.6	0.003	0.57	0.0	0.04	15.39	0.00	2.407	5.46	2.47	1.9	98.1	0.0	2.29	1.40	0.55	0.73	1.70	19518	2328	12	0	18	0	0	logfile
✔	8ZXK	60542	2025-01-17	2024-06-14	2.76	2.94	2.77	3.0	0.003	0.54	0.0	0.04	16.40	0.00	2.171	8.86	0.16	4.7	95.3	0.0	2.48	0.72	0.81	2.31	3.0	0.003	0.55	0.0	0.04	16.90	0.00	2.479	8.27	3.58	4.6	95.4	0.0	2.72	0.19	0.62	0.81	2.34	11653	1490	6	0	3	0	0	logfile
✔	8ZX6	60539	2025-01-13	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.007	0.78	0.0	0.05	14.16	0.00	2.638	7.22	1.52	11.9	88.1	0.0	-3.55	0.71	0.35	0.84	5.02	3468	456	6	0	0	0	0	logfile
✔	8ZX1	60536	2025-01-16	2024-06-13	3.5	2.57	3.56	2.3	0.007	1.12	2.0	0.06	13.96	0.01	1.921	17.54	1.01	3.5	96.5	0.0	-0.25	0.61	0.61	0.90	2.3	0.003	0.72	0.0	0.04	16.78	0.00	2.412	8.37	3.50	3.2	96.8	0.0	0.30	0.70	0.71	0.69	0.71	9846	1240	4	0	0	0	0	logfile
✔	8ZWL	60532	2025-01-13	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.004	0.65	0.0	0.05	13.63	0.00	2.614	4.24	1.26	2.0	98.0	0.0	-2.95	0.51	0.33	0.85	4.78	3468	456	6	0	0	0	0	logfile
✔	8ZWM	60533	2025-01-13	2024-06-13	3.2	3.28	2.96	3.3	0.005	0.67	0.0	0.05	11.92	0.00	2.167	4.43	0.00	2.3	97.7	0.0	-3.69	0.35	0.90	6.45	3.3	0.003	0.54	0.0	0.05	14.68	0.00	2.613	2.72	0.76	2.5	97.5	0.0	-2.22	1.26	0.33	0.90	5.89	3435	453	6	0	0	0	0	logfile
✔	8ZWH	60527	2025-01-13	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.002	0.52	0.0	0.05	11.71	0.00	2.631	6.43	1.32	5.0	95.0	0.0	-3.24	1.17	0.43	0.85	3.74	2268	330	6	0	0	0	0	logfile
✔	8ZWi	60528	2025-01-13	2024-06-13	3.0	2.75	2.12	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.006	0.63	0.0	0.05	15.16	0.00	2.588	5.57	1.55	3.7	96.3	0.0	-2.04	0.90	0.42	0.86	5.73	2526	366	6	0	0	0	0	logfile
✔	8ZWJ	60529	2025-01-13	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.83	0.00	2.573	3.76	3.33	8.7	91.3	0.0	-2.16	1.27	0.42	0.86	4.43	2760	378	8	6	0	0	0	logfile
✔	8ZWK	60530	2025-01-13	2024-06-13	3.4	2.76	2.79	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.57	0.0	0.05	16.54	0.00	2.606	5.91	5.19	8.2	91.8	0.0	-3.46	1.50	0.36	0.82	4.46	2760	378	8	6	0	0	0	logfile
✔	9C8R	45308	2025-01-18	2024-06-12	2.83	3.00	2.86	3.0	0.003	0.55	0.0	0.04	15.12	0.00	2.220	3.55	0.95	2.4	97.6	0.0	-0.07	0.70	0.90	4.57	3.0	0.002	0.49	0.0	0.04	15.65	0.00	2.433	2.55	1.26	2.0	98.0	0.0	0.32	0.74	0.73	0.91	4.25	12220	1544	3	0	0	0	0	logfile
✔	9C86	45298	2025-01-19	2024-06-12	2.9	3.44	3.01	3.3	0.004	0.59	0.0	0.04	16.83	0.00	1.947	43.20	4.30	4.8	95.2	0.1	0.38	0.64	0.73	2.64	3.3	0.004	0.57	0.0	0.04	16.94	0.00	1.413	42.06	4.44	6.6	93.4	0.0	0.03	0.24	0.61	0.71	2.51	14540	1942	5	0	0	0	44	logfile
✔	9FoR	50628	2025-01-13	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.004	0.90	0.0	0.04	16.08	0.01	2.626	0.92	1.59	7.2	92.8	0.0	-5.35	0.40	0.53	0.91	6.30	3405	490	10	0	0	0	0	logfile
✔	8ZW8	60519	2025-01-18	2024-06-12	3.05	3.27	3.06	3.3	0.003	0.60	0.0	0.04	16.41	0.00	2.140	9.12	0.65	3.8	96.2	0.0	1.59	0.63	0.82	1.79	3.3	0.005	0.61	0.0	0.04	16.60	0.00	2.550	7.16	3.33	4.1	95.9	0.0	1.70	0.24	0.64	0.83	2.27	11652	1491	3	0	0	0	0	logfile
✔	9C88	45300	2025-01-24	2024-06-12	2.6	3.12	2.61	2.9	0.002	0.50	0.0	0.04	9.78	0.02	1.909	3.07	0.03	2.4	97.6	0.0	0.74	0.78	0.81	3.79	2.9	0.002	0.52	0.0	0.04	14.01	0.00	1.888	4.10	0.38	2.7	97.3	0.0	1.21	1.33	0.79	0.82	3.26	73908	4723	27	0	20	0	37082	logfile
✔	9C87	45299	2025-01-25	2024-06-12	3.7	4.25	3.77	4.0	0.004	0.70	1.0	0.04	12.08	0.00	2.039	3.80	0.00	0.1	99.9	0.0	-1.93	0.84	0.76	1.30	3.9	0.004	0.60	1.0	0.04	14.62	0.00	1.757	6.88	0.89	4.4	95.6	0.0	-0.04	0.85	0.85	0.77	1.41	77104	4927	28	0	11	0	38668	logfile
✔	9FoF	50621	2025-01-13	2024-06-11	2.9	2.55	2.80	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.006	0.98	0.0	0.05	17.69	0.00	2.593	1.76	1.56	7.8	92.2	0.0	-4.69	1.98	0.51	0.89	5.50	4176	600	12	0	0	0	0	logfile

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