Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K1D	61972	2025-01-14	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.57	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	3.5	0.003	0.66	0.0	0.04	16.75	0.00	2.420	7.36	4.23	3.1	96.9	0.0	0.65	0.42	0.71	0.85	1.47	6892	858	5	0	6	0	0	logfile
✔	9K1C	61971	2025-01-14	2024-10-16	3.2	3.44	3.16	3.5	0.002	0.92	0.0	0.04	13.74	0.00	2.213	5.89	0.00	2.2	97.8	0.0	2.36	0.64	0.76	2.57	3.5	0.004	0.60	0.0	0.04	15.46	0.00	2.410	6.34	2.36	3.0	97.0	0.0	1.55	0.42	0.60	0.79	2.44	6611	871	5	0	1	0	0	logfile
✔	9DXS	47297	2025-01-20	2024-10-11	3.55	4.09	3.67	4.0	0.011	1.47	0.0	0.19	20.28	0.01	2.217	4.35	0.39	11.0	88.4	0.6	-5.80	0.60	0.82	3.26	4.0	0.004	0.99	0.0	0.07	18.32	0.00	2.254	11.01	4.07	10.2	89.7	0.1	-0.62	3.16	0.62	0.84	2.07	15294	1784	14	0	43	0	0	logfile
✔	9DXA	47283	2025-01-21	2024-10-11	3.4	3.75	3.47	3.7	0.009	0.80	0.0	0.04	15.02	0.00	2.281	4.71	0.23	2.4	97.6	0.0	1.98	0.63	0.79	1.86	3.7	0.003	0.56	0.0	0.04	15.29	0.00	2.296	7.94	3.20	2.8	97.2	0.0	2.27	1.29	0.61	0.80	1.26	16291	1880	12	0	18	0	0	logfile
✔	9DX7	47282	2025-01-21	2024-10-10	3.3	3.69	3.41	3.7	0.010	0.79	0.0	0.04	12.83	0.00	2.254	4.50	0.17	2.0	98.0	0.0	1.85	0.63	0.81	2.53	3.7	0.003	0.53	0.0	0.04	15.19	0.00	2.456	7.56	3.21	2.6	97.4	0.0	2.28	1.63	0.60	0.79	1.91	16238	1873	12	0	18	0	0	logfile
✔	9H1P	51769	2025-01-17	2024-10-10	3.1	3.40	3.10	3.4	0.004	0.67	0.0	0.04	13.91	0.01	2.482	1.72	0.00	0.0	100.0	0.0	-1.00	0.50	0.78	4.07	3.4	0.003	0.47	0.0	0.04	14.86	0.00	2.659	2.51	1.13	0.3	99.7	0.0	1.41	0.42	0.43	0.74	3.09	10668	1332	24	0	0	0	0	logfile
✘	9DWE	47241	2025-01-21	2024-10-09	2.8	3.10	2.94	3.1	0.005	0.76	0.0	0.05	14.21	0.01	1.485	3.75	0.00	2.8	97.2	0.0	-0.83	0.72	0.87	4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17400	2187	15	0	21	0	3	logfile
✔	9DW9	47239	2025-01-18	2024-10-08	2.8	3.05	2.88	3.1	0.004	0.67	1.0	0.04	15.32	0.00	1.931	2.37	1.69	2.2	97.8	0.0	0.50	0.68	0.87	3.80	3.0	0.002	0.49	0.0	0.04	16.47	0.00	2.019	2.53	1.30	2.6	97.4	0.0	1.52	0.31	0.69	0.87	3.11	12332	1511	5	0	19	3	0	logfile
✔	9DW5	47236	2025-01-16	2024-10-08	3.8	4.25	3.99	4.1	0.005	0.76	0.0	0.04	14.41	0.00	2.012	6.90	2.49	2.8	97.2	0.1	0.83	0.63	0.78	1.61	4.1	0.003	0.64	0.0	0.04	14.90	0.00	1.973	7.18	5.26	3.6	96.4	0.0	0.95	0.74	0.62	0.78	1.36	9748	1464	3	0	3	0	0	logfile
✘	9JUB	61826	2025-01-14	2024-10-07	3.1	3.29	3.10	3.4	0.007	0.79	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6479	829	5	0	5	0	0	logfile
✔	9DVA	47194	2025-01-22	2024-10-07	3.1	3.30	3.09	3.3	0.003	0.51	0.0	0.04	14.23	0.00	2.077	4.00	0.00	1.2	98.8	0.0	0.25	0.62	0.81	3.20	3.3	0.004	0.59	0.0	0.04	15.80	0.00	2.192	4.17	1.45	1.9	98.1	0.0	0.77	1.09	0.70	0.86	2.60	18529	2354	13	0	10	0	0	logfile
✔	9DUV	47180	2025-01-22	2024-10-04	3.3	3.73	3.44	3.7	0.006	0.88	0.0	0.05	18.91	0.00	1.752	11.79	1.06	5.0	94.8	0.2	0.26	0.62	0.84	2.05	3.7	0.004	0.65	0.0	0.05	17.87	0.00	2.333	6.52	3.12	5.1	94.9	0.0	0.68	0.30	0.61	0.84	1.92	17947	2268	26	0	19	0	0	logfile
✔	9DUU	47179	2025-01-22	2024-10-04	3.4	3.70	3.43	3.7	0.005	0.76	3.0	0.04	17.76	0.00	1.752	10.45	0.85	4.4	95.4	0.3	0.69	0.64	0.86	1.79	3.7	0.003	0.61	0.0	0.05	17.62	0.00	2.194	7.13	3.12	5.0	94.8	0.3	0.63	0.29	0.66	0.87	1.72	17953	2268	26	0	19	0	0	logfile
✔	9DUQ	47173	2025-01-20	2024-10-03	2.8	2.95	2.85	3.2	0.004	0.66	0.0	0.05	14.26	0.00	1.883	10.55	0.03	2.9	97.1	0.0	0.28	0.69	0.86	2.50	3.2	0.003	0.72	0.0	0.04	16.65	0.00	1.964	10.90	1.71	3.0	97.0	0.0	0.57	0.48	0.69	0.87	2.47	64539	8127	45	0	36	0	0	logfile
✔	9GYo	51700	2025-01-15	2024-10-02	2.5	2.39	2.45	2.5	0.007	1.20	0.0	0.06	14.41	0.01	2.139	1.55	0.71	2.9	97.1	0.0	-1.22	0.67	0.89	5.17	2.5	0.003	0.60	0.0	0.04	15.81	0.00	2.577	3.71	1.89	2.0	98.0	0.0	1.60	0.84	0.67	0.89	4.44	8087	1028	6	0	4	0	0	logfile
✔	9DTT	47165	2025-01-15	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.8	0.002	0.64	0.0	0.04	20.55	0.00	2.375	12.45	2.17	5.8	94.1	0.1	-1.32	1.02	0.55	0.42	0.68	8274	850	3	67	2	0	0	logfile
✔	9JST	61782	2025-01-13	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.57	0.0	0.05	12.46	0.00	2.554	0.23	1.85	5.3	94.7	0.0	-1.67	0.73	0.46	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	9DTQ	47156	2025-01-18	2024-10-01	2.87	3.14	2.91	3.2	0.003	0.54	0.0	0.17	18.95	0.01	2.188	4.83	4.08	3.6	96.2	0.1	-0.06	0.66	0.85	3.48	3.2	0.005	0.62	0.0	0.05	18.67	0.00	2.327	4.41	4.08	4.5	95.4	0.1	-0.11	0.27	0.66	0.85	3.59	12162	1523	5	0	1	0	0	logfile
✔	9JSW	61785	2025-01-13	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.003	0.63	0.0	0.05	13.96	0.01	2.490	0.23	0.46	4.5	95.5	0.0	-1.91	1.48	0.45	0.90	7.25	4304	280	8	0	0	0	2128	logfile
✔	9JSV	61784	2025-01-13	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile

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