Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JSV	61784	2025-01-13	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile
✔	9DTT	47165	2025-01-15	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.8	0.002	0.64	0.0	0.04	20.55	0.00	2.375	12.45	2.17	5.8	94.1	0.1	-1.32	1.02	0.55	0.42	0.68	8274	850	3	67	2	0	0	logfile
✔	9DTG	47155	2025-01-15	2024-09-30	3.83	4.14	3.79	4.1	0.003	0.65	0.0	0.04	14.39	0.00	2.199	7.26	0.79	9.2	90.6	0.2	-3.94	0.70	0.75	1.58	4.1	0.002	0.60	0.0	0.04	15.65	0.00	2.520	5.57	3.49	10.0	89.9	0.1	-3.38	1.01	0.70	0.79	1.45	8069	1023	2	0	0	0	0	logfile
✔	9JR2	61746	2025-01-16	2024-09-29	2.8	2.91	—	3.0	0.003	0.51	0.0	0.04	14.04	0.00	2.142	3.21	0.31	2.8	97.2	0.0	0.54	0.26	0.61	3.01	2.9	0.006	0.67	0.0	0.04	15.81	0.00	2.505	8.05	3.43	4.3	95.7	0.0	0.77	0.64	0.50	0.77	2.62	9418	1225	8	0	1	1	0	logfile
✔	9JR3	61747	2025-01-16	2024-09-29	2.8	2.91	—	2.9	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	2.9	0.003	0.61	0.0	0.04	15.64	0.00	2.514	7.37	3.64	2.8	97.1	0.1	0.91	0.90	0.49	0.76	2.30	9455	1228	9	0	3	1	0	logfile
✔	9JQT	61741	2025-01-14	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.0	0.004	0.57	0.0	0.04	15.04	0.00	2.610	7.11	3.15	2.1	97.9	0.0	0.70	0.31	0.55	0.79	3.34	5669	720	4	0	0	0	0	logfile
✔	9GVQ	51639	2025-01-22	2024-09-25	3.9	4.56	3.85	9.3	0.004	0.52	0.0	0.04	15.96	0.00	0.942	7.11	2.27	3.3	96.7	0.0	0.27	0.43	0.15	-0.11	3.4	0.003	0.76	0.0	0.05	16.14	0.00	2.058	13.81	1.43	4.7	95.3	0.0	-0.58	1.45	0.58	0.55	0.21	69500	9216	16	0	32	0	0	logfile
✔	9GVJ	51636	2025-01-22	2024-09-24	2.91	3.20	2.84	3.1	0.002	0.51	0.0	0.04	15.91	0.00	2.184	5.74	2.22	3.2	96.8	0.0	0.26	0.73	0.90	3.60	3.1	0.005	0.59	0.0	0.05	15.90	0.00	2.072	3.93	1.70	3.9	96.1	0.0	0.27	0.20	0.73	0.90	3.57	17636	2304	12	0	14	177	0	logfile
✘	9GUU	51620	2025-01-16	2024-09-20	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55336	2596	25	1633	120	0	0	logfile
✘	9GUS	51618	2025-01-16	2024-09-20	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55373	2597	26	1634	125	0	0	logfile
✘	9GUT	51619	2025-01-17	2024-09-20	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58183	2939	27	1633	137	0	0	logfile
✘	9GUW	51622	2025-01-26	2024-09-20	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80600	5870	35	1608	121	0	0	logfile
✘	9GUV	51621	2025-01-16	2024-09-20	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55998	2774	26	1633	86	0	0	logfile
✘	9GUP	51615	2025-01-15	2024-09-20	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53689	2594	24	1556	86	0	0	logfile
✘	9GUQ	51616	2025-01-16	2024-09-20	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55411	2595	26	1636	128	0	0	logfile
✔	9JKQ	61567	2025-01-15	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.002	0.52	0.0	0.04	15.84	0.00	2.561	4.74	2.08	2.6	97.4	0.0	1.24	1.24	0.66	0.84	2.85	8386	1055	6	0	1	0	0	logfile
✔	9DMY	47020	2025-01-14	2024-09-16	2.8	2.57	2.74	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.004	0.72	0.0	0.05	18.11	0.00	2.634	14.68	3.08	6.5	93.5	0.0	-4.18	1.35	0.45	0.80	3.27	5550	690	5	0	0	0	0	logfile
✔	9DMZ	47021	2025-01-14	2024-09-16	2.8	2.58	2.73	2.5	0.003	0.60	0.0	0.06	13.01	0.00	2.275	10.79	0.00	1.5	98.5	0.0	-3.51	0.43	0.77	3.82	2.5	0.004	0.73	0.0	0.06	17.65	0.00	2.602	14.51	2.05	6.3	93.7	0.0	-4.18	1.36	0.46	0.80	3.37	5690	690	10	0	10	0	0	logfile
✔	9JKB	61550	2025-01-16	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.004	0.71	0.0	0.04	17.54	0.00	2.523	13.61	2.56	4.2	95.8	0.0	0.45	1.03	0.78	0.80	1.08	9532	1179	5	0	0	0	0	logfile
✔	9JK8	61547	2025-01-22	2024-09-15	2.6	2.84	2.66	2.9	0.005	0.82	0.0	0.05	9.73	0.01	2.028	13.62	0.00	3.1	96.9	0.0	-1.32	0.64	0.80	3.74	2.9	0.003	0.61	0.0	0.04	14.87	0.00	2.356	9.05	2.06	3.3	96.7	0.0	1.62	1.62	0.67	0.83	3.47	18504	2256	6	0	0	0	0	logfile

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