Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JKB	61550	2025-01-16	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.004	0.71	0.0	0.04	17.54	0.00	2.523	13.61	2.56	4.2	95.8	0.0	0.45	1.03	0.78	0.80	1.08	9532	1179	5	0	0	0	0	logfile
✔	9JK8	61547	2025-01-22	2024-09-15	2.6	2.84	2.66	2.9	0.005	0.82	0.0	0.05	9.73	0.01	2.028	13.62	0.00	3.1	96.9	0.0	-1.32	0.64	0.80	3.74	2.9	0.003	0.61	0.0	0.04	14.87	0.00	2.356	9.05	2.06	3.3	96.7	0.0	1.62	1.62	0.67	0.83	3.47	18504	2256	6	0	0	0	0	logfile
✔	9JK9	61548	2025-01-22	2024-09-15	2.2	2.48	2.29	2.5	0.006	0.97	0.0	0.05	9.35	0.01	2.025	5.96	0.30	3.0	97.0	0.0	-2.48	0.64	0.78	4.58	2.5	0.003	0.59	0.0	0.04	15.25	0.00	2.539	9.11	2.06	3.0	97.0	0.0	2.04	1.24	0.66	0.82	3.02	18582	2268	6	0	0	0	0	logfile
✔	9JKA	61549	2025-01-22	2024-09-15	2.5	2.91	2.70	2.9	0.007	0.90	0.0	0.05	8.50	0.01	2.029	4.45	0.00	1.4	98.6	0.0	-2.23	0.63	0.80	3.84	2.9	0.003	0.57	0.0	0.04	15.74	0.00	2.611	7.22	1.79	1.2	98.8	0.0	2.41	0.68	0.65	0.83	2.75	17820	2172	6	0	0	0	0	logfile
✔	9JJi	61528	2025-01-16	2024-09-13	3.4	2.52	3.39	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.004	0.65	0.0	0.05	14.91	0.01	2.493	4.06	2.95	2.6	97.4	0.0	-0.62	2.00	0.61	0.82	3.27	10021	1332	4	0	0	0	0	logfile
✔	9JJH	61527	2025-01-26	2024-09-13	2.4	2.34	2.48	2.4	0.002	0.55	0.0	0.05	14.02	0.00	1.138	3.39	0.00	1.2	98.8	0.0	-0.05	0.69	0.87	4.23	2.4	0.002	0.54	0.0	0.05	15.23	0.00	2.624	3.06	2.61	0.9	99.1	0.0	-0.36	0.47	0.70	0.88	4.66	77880	10080	60	0	0	0	0	logfile
✔	9GQo	51510	2025-01-14	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.004	0.86	0.0	0.04	18.13	0.00	1.907	20.42	3.87	7.2	92.8	0.0	-0.95	1.41	0.82	0.82	0.04	6716	880	2	0	3	0	0	logfile
✔	9GNQ	51477	2025-01-16	2024-09-03	2.9	3.52	2.88	3.3	0.006	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.66	0.0	0.05	16.09	0.00	1.974	4.31	1.79	2.3	97.7	0.0	1.29	2.01	0.72	0.89	3.42	9309	1166	7	1	4	0	0	logfile
✔	9DGG	46823	2025-01-18	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.004	0.69	0.0	0.04	27.35	0.00	2.393	9.91	2.18	3.0	97.0	0.0	2.56	0.55	0.90	0.89	2.08	13339	959	14	286	4	0	0	logfile
✔	9JE0	61403	2025-01-13	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.69	0.0	0.04	15.93	0.00	2.614	8.66	2.61	2.6	97.4	0.0	2.09	0.61	0.43	0.70	1.21	3321	435	2	0	1	1	0	logfile
✔	9DG3	46822	2025-01-18	2024-09-01	3.46	4.35	3.61	3.6	0.005	0.79	0.0	0.05	28.10	0.01	2.182	9.07	0.15	2.6	97.4	0.0	1.39	0.92	0.86	1.88	3.6	0.005	0.66	0.0	0.04	27.73	0.00	2.098	11.25	1.98	3.5	96.5	0.0	2.18	0.47	0.92	0.87	1.68	12553	860	13	292	1	0	0	logfile
✔	9JDV	61399	2025-01-13	2024-09-01	3.32	3.91	3.55	3.9	0.006	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.003	0.66	0.0	0.04	16.25	0.00	2.340	10.03	2.90	3.1	96.9	0.0	2.29	1.06	0.47	0.72	1.33	3311	435	2	0	1	1	0	logfile
✔	9JDB	61387	2025-01-14	2024-08-31	2.64	2.91	2.73	2.9	0.007	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.005	0.79	0.0	0.05	17.87	0.01	2.592	3.56	1.13	2.6	97.4	0.0	0.06	0.20	0.70	0.87	4.20	6592	808	4	0	2	0	0	logfile
✔	9GMW	51456	2025-01-19	2024-08-29	3.0	3.07	2.90	3.1	0.004	0.63	0.0	0.04	16.81	0.00	1.874	4.69	0.34	2.3	97.7	0.0	0.76	0.69	0.85	3.66	3.1	0.004	0.60	0.0	0.04	17.76	0.00	1.966	5.91	1.56	2.4	97.6	0.0	1.15	0.86	0.71	0.86	3.24	14541	1654	6	56	9	0	0	logfile
✔	9DER	46794	2025-01-20	2024-08-29	3.9	5.17	4.02	4.0	0.003	0.56	0.0	0.05	15.30	0.00	2.080	5.89	0.90	3.7	96.3	0.0	-0.23	0.86	0.71	0.15	4.1	0.003	0.63	0.0	0.05	11.73	0.00	1.921	9.43	0.90	5.3	94.7	0.0	-0.66	1.78	0.88	0.75	0.09	14207	925	9	0	24	2	6843	logfile
✔	9GMX	51457	2025-01-19	2024-08-29	2.82	2.87	2.73	2.9	0.007	0.71	1.0	0.05	16.92	0.01	1.888	4.13	0.54	3.2	96.8	0.0	0.15	0.70	0.86	3.74	2.9	0.003	0.57	0.0	0.04	17.76	0.00	2.041	5.73	1.42	2.2	97.8	0.0	1.06	2.34	0.72	0.87	2.75	14540	1654	7	56	8	0	0	logfile
✔	9DDE	46771	2025-01-20	2024-08-28	3.2	4.04	3.22	3.3	0.004	0.65	0.0	0.04	26.36	0.01	2.226	7.39	0.33	2.7	97.3	0.0	1.79	0.88	0.82	2.44	3.3	0.005	0.65	0.0	0.04	26.60	0.00	2.450	7.39	1.66	3.1	96.9	0.0	2.01	0.63	0.92	0.90	2.05	15394	1147	18	324	5	0	0	logfile
✔	9DBY	46728	2025-01-19	2024-08-24	2.8	3.83	2.83	2.8	0.004	0.66	0.0	0.04	26.42	0.00	2.249	7.40	0.23	2.6	97.4	0.0	2.14	0.86	0.74	0.79	2.9	0.005	0.67	0.0	0.04	26.49	0.00	2.489	8.51	1.76	3.0	97.0	0.0	1.90	0.94	0.93	0.90	1.69	14368	1081	17	296	5	0	0	logfile
✔	9JA5	61290	2025-01-15	2024-08-24	2.7	3.43	2.71	3.3	0.014	1.15	0.0	0.06	14.30	0.01	2.117	13.83	0.00	12.9	87.1	0.0	-2.73	0.62	0.83	2.49	3.3	0.003	0.72	0.0	0.04	18.07	0.00	2.548	7.88	1.07	6.1	93.9	0.0	1.83	0.97	0.57	0.78	1.24	8469	1002	12	0	0	123	0	logfile
✔	9JA6	61291	2025-01-14	2024-08-24	4.4	3.40	4.33	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.3	0.002	0.61	0.0	0.04	12.99	0.00	2.394	7.46	0.00	0.7	99.3	0.0	3.13	1.55	0.71	0.76	—	4880	588	4	0	0	0	0	logfile

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