Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GK2	51414	2025-01-18	2024-08-23	2.5	3.25	2.53	2.9	0.004	0.74	8.0	0.04	19.42	0.01	2.075	9.60	4.15	4.1	95.6	0.3	1.13	0.61	0.68	1.58	3.0	0.003	0.62	0.0	0.04	19.11	0.00	2.438	6.53	3.67	3.4	96.4	0.2	2.49	0.91	0.60	0.70	1.46	60516	7776	18	0	0	0	0	logfile
✔	9JA0	61286	2025-01-23	2024-08-23	3.14	3.38	3.16	3.4	0.003	0.67	0.0	0.04	11.92	0.01	1.961	8.89	0.00	2.8	97.2	0.0	-4.28	0.75	0.86	3.05	3.4	0.003	0.52	0.0	0.04	14.28	0.00	2.638	4.40	0.80	4.3	95.7	0.0	1.01	0.94	0.72	0.85	2.67	19716	2628	12	0	0	0	0	logfile
✔	9DBQ	46724	2025-01-16	2024-08-23	2.9	3.52	2.91	3.5	0.003	0.56	0.0	0.04	12.63	0.00	2.057	2.92	0.10	2.2	97.8	0.0	1.15	0.67	0.73	1.85	3.5	0.003	0.63	0.0	0.04	14.92	0.00	2.424	7.90	1.90	3.1	96.9	0.0	2.04	1.40	0.68	0.74	1.37	10062	1182	4	0	20	0	0	logfile
✔	9J8P	61237	2025-01-14	2024-08-21	3.21	3.65	—	1.5	0.006	0.90	0.0	0.05	20.97	0.01	2.235	10.53	0.00	5.4	94.6	0.0	-0.46	0.92	0.83	1.79	1.5	0.003	0.69	0.0	0.04	21.55	0.00	2.366	11.76	1.55	3.3	96.7	0.0	0.54	2.59	0.93	0.86	1.34	7061	623	3	106	1	0	0	logfile
✔	9D9L	46676	2025-01-15	2024-08-21	4.0	3.70	—	3.6	0.012	1.86	15.0	0.10	13.80	0.01	2.522	0.06	0.87	5.4	94.6	0.0	-1.53	0.50	0.65	—	3.6	0.003	0.59	1.0	0.04	15.49	0.00	2.211	4.14	1.67	4.3	95.7	0.0	-1.55	1.71	0.63	0.78	—	49929	3384	12	0	0	0	24441	logfile
✔	9D8P	46645	2025-01-13	2024-08-19	3.2	3.70	3.13	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.78	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.003	0.51	0.0	0.04	15.76	0.00	2.506	5.89	3.63	2.1	97.9	0.0	0.19	0.18	0.79	0.84	3.24	4073	537	4	0	0	0	0	logfile
✔	9D85	46630	2025-01-14	2024-08-18	3.59	3.91	3.62	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.004	0.83	0.0	0.05	21.79	0.00	2.217	21.50	2.76	4.8	95.2	0.0	-1.67	1.65	0.75	0.60	0.96	7201	739	5	65	0	0	0	logfile
✔	9D7K	46607	2025-01-13	2024-08-16	3.0	2.55	3.04	2.9	0.002	0.55	0.0	0.04	17.29	0.00	2.308	9.53	1.60	3.1	96.9	0.0	0.63	0.65	0.67	2.01	2.2	0.004	0.90	0.0	0.05	18.28	0.01	2.507	17.82	3.19	4.5	95.5	0.0	0.35	1.35	0.66	0.72	2.38	2843	359	1	0	0	0	0	logfile
✘	9GGQ	51339	2025-01-26	2024-08-13	2.6	3.32	2.71	3.0	0.003	0.50	0.0	0.04	14.80	0.00	1.848	3.87	0.37	3.4	96.6	0.0	0.28	0.80	0.87	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24628	2905	16	84	6	8	0	logfile
✔	9GG6	51325	2025-01-13	2024-08-13	3.36	3.18	3.07	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.73	0.0	0.05	17.63	0.00	2.563	4.57	6.43	9.2	90.8	0.0	-2.26	0.54	0.39	0.89	4.21	2142	288	3	0	0	0	0	logfile
✔	9GG0	51319	2025-01-13	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.55	0.0	0.05	15.90	0.00	2.567	1.23	2.20	2.5	97.5	0.0	-2.13	0.33	0.39	0.88	5.78	2385	321	3	0	0	0	0	logfile
✔	9GG1	51320	2025-01-13	2024-08-12	2.26	2.29	2.15	2.2	0.008	1.28	0.0	0.08	14.09	0.01	2.610	1.51	0.00	5.7	94.3	0.0	-2.57	0.45	0.92	7.85	2.2	0.004	0.73	0.0	0.05	15.81	0.00	2.534	2.72	0.81	3.1	96.0	1.0	-2.31	0.91	0.46	0.92	7.14	3232	428	4	0	0	0	0	logfile
✔	9J4X	61138	2025-01-14	2024-08-10	2.9	3.08	2.89	3.1	0.003	0.52	0.0	0.04	12.98	0.00	2.140	7.96	1.33	4.6	95.4	0.0	0.84	0.60	0.83	3.05	3.1	0.004	0.56	0.0	0.04	15.54	0.00	2.590	7.36	1.47	4.4	95.6	0.0	1.55	0.33	0.61	0.83	2.20	6588	764	4	0	4	0	0	logfile
✔	9D3D	46532	2025-01-21	2024-08-09	3.41	3.73	3.55	3.7	0.003	0.58	0.0	0.04	10.40	0.00	1.972	4.07	1.04	3.0	97.0	0.0	-1.46	0.73	0.85	3.48	3.7	0.006	0.77	0.0	0.05	13.23	0.00	2.431	5.25	2.71	5.0	95.0	0.0	-0.76	0.47	0.74	0.87	2.79	17243	1973	50	0	130	0	0	logfile
✔	9D1W	46478	2025-01-21	2024-08-08	3.44	3.87	3.54	3.8	0.003	0.63	0.0	0.04	14.31	0.00	1.921	4.26	1.73	4.3	95.6	0.1	-1.22	0.66	0.82	2.83	3.8	0.003	0.67	0.0	0.05	14.84	0.00	2.511	3.81	2.48	4.7	95.2	0.1	-0.73	0.58	0.60	0.79	2.63	17036	1965	39	0	118	0	0	logfile
✔	9D0T	46461	2025-01-22	2024-08-07	2.84	2.67	2.91	1.9	0.014	1.89	0.0	0.10	13.69	0.01	2.391	0.01	0.32	5.5	94.5	0.0	-2.16	0.81	0.72	2.42	1.9	0.004	0.68	0.0	0.04	16.66	0.00	2.090	6.69	1.51	4.7	95.3	0.0	0.23	1.44	0.91	0.87	2.51	67179	4230	12	0	0	0	33578	logfile
✔	9J2N	61099	2025-01-13	2024-08-07	3.3	3.54	3.29	3.6	0.006	0.81	0.0	0.04	16.62	0.01	2.233	13.33	0.00	4.9	95.1	0.0	0.45	0.65	0.86	2.03	3.5	0.003	0.60	0.0	0.04	15.57	0.00	2.573	7.28	1.06	3.4	96.6	0.0	1.34	0.76	0.63	0.88	1.54	3584	468	2	0	1	0	0	logfile
✔	9CZP	46424	2025-01-14	2024-08-05	3.3	3.59	3.27	3.5	0.021	2.01	0.0	0.11	10.68	0.01	2.402	0.40	0.00	7.0	93.0	0.0	-0.29	0.47	0.84	6.05	3.5	0.005	0.64	0.0	0.06	16.76	0.00	2.558	10.44	3.40	9.5	90.5	0.0	-1.43	1.61	0.42	0.84	4.71	5020	680	20	0	0	0	0	logfile
✔	9CZi	46417	2025-01-14	2024-08-05	3.0	3.03	2.88	3.0	0.021	1.92	0.0	0.10	9.10	0.01	2.435	0.79	0.00	7.0	93.0	0.0	-1.72	0.38	0.80	5.58	3.0	0.004	0.67	0.0	0.05	18.43	0.00	2.522	6.95	1.41	4.9	95.1	0.0	-2.15	1.28	0.47	0.87	4.72	5570	730	10	0	0	0	0	logfile
✔	9CZL	46420	2025-01-14	2024-08-05	2.9	3.25	2.64	3.2	0.023	1.95	0.0	0.09	9.53	0.01	2.463	0.52	0.00	5.6	94.4	0.0	-1.27	0.54	0.85	5.46	3.2	0.005	0.77	0.0	0.05	17.12	0.00	2.581	4.15	1.54	6.8	93.2	0.0	-1.73	1.67	0.45	0.84	5.31	5660	740	10	0	0	0	0	logfile

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