Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CZN	46422	2025-01-14	2024-08-05	2.6	2.70	2.56	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.006	0.71	0.0	0.06	19.24	0.00	2.613	8.15	1.60	5.2	94.8	0.0	-1.20	3.21	0.56	0.88	5.45	5020	680	20	0	0	0	0	logfile
✔	9GD3	51247	2025-01-22	2024-08-04	3.0	3.49	2.92	3.1	0.005	0.85	0.0	0.06	24.31	0.01	2.176	1.23	0.07	2.2	97.8	0.0	-0.07	0.78	0.74	3.10	3.1	0.003	0.62	0.0	0.03	23.95	0.00	1.251	6.42	1.06	2.0	98.0	0.0	2.26	1.08	0.86	0.89	2.61	19030	1630	13	284	3	0	0	logfile
✔	9GD0	51238	2025-01-23	2024-08-04	2.8	3.26	—	3.0	0.006	0.84	0.0	0.05	27.26	0.01	2.229	4.41	0.00	0.5	99.5	0.0	-0.62	0.86	0.82	3.22	3.0	0.004	0.63	0.0	0.03	28.00	0.00	2.409	7.11	2.57	1.5	98.5	0.0	2.54	1.33	0.88	0.86	2.02	20207	1253	16	500	0	0	0	logfile
✔	9GCK	51231	2025-01-18	2024-08-02	3.7	4.29	3.78	3.0	0.015	1.89	4.0	0.12	21.02	0.01	1.954	10.65	0.77	5.0	94.7	0.2	-2.69	0.82	0.70	0.99	2.8	0.006	0.83	0.0	0.05	21.25	0.01	2.466	23.40	1.96	5.1	94.8	0.1	-0.75	3.54	0.80	0.63	0.45	12298	1287	6	90	0	0	0	logfile
✔	9GCU	51237	2025-01-23	2024-08-02	2.8	3.33	2.68	3.1	0.003	0.67	0.0	0.04	13.27	0.00	2.040	12.45	0.09	2.0	98.0	0.0	0.35	0.86	0.85	2.65	3.1	0.004	0.92	1.0	0.06	15.70	0.00	1.635	11.39	1.21	2.0	97.9	0.0	0.62	0.50	0.87	0.88	2.59	20023	2508	16	0	10	83	0	logfile
✔	9GCS	51235	2025-01-17	2024-08-02	3.9	4.39	3.99	3.9	0.002	0.48	0.0	0.04	12.24	0.00	1.874	12.75	2.21	2.0	98.0	0.0	1.04	0.89	0.76	0.50	3.9	0.003	0.76	0.0	0.04	14.90	0.00	1.827	16.48	2.33	2.9	97.1	0.0	0.64	1.04	0.92	0.83	0.53	54740	6898	34	0	24	0	0	logfile
✔	9GCT	51236	2025-01-24	2024-08-02	3.7	4.37	3.80	3.8	0.003	0.70	0.0	0.04	14.77	0.00	2.031	16.90	0.00	2.9	97.1	0.0	0.21	0.89	0.73	0.51	3.8	0.003	0.79	0.0	0.04	16.44	0.00	1.880	14.94	1.94	2.9	97.1	0.0	0.40	0.54	0.92	0.84	0.77	73940	9322	45	0	30	0	0	logfile
✔	9GC3	51228	2025-01-20	2024-08-01	2.46	3.18	2.52	2.9	0.013	1.54	3.0	0.11	18.38	0.01	2.311	1.26	0.00	2.2	97.8	0.0	-0.68	0.92	0.93	5.50	2.9	0.003	0.55	0.0	0.04	18.10	0.00	2.510	4.15	0.73	1.3	98.7	0.0	0.75	1.01	0.88	0.90	4.15	15046	1673	5	80	0	0	0	logfile
✔	9iZX	61045	2025-01-19	2024-08-01	3.0	4.21	3.05	3.5	0.002	0.51	0.0	0.04	8.95	0.00	1.332	4.11	0.46	2.3	97.6	0.1	-0.23	0.85	0.69	1.91	3.6	0.004	0.82	0.0	0.05	13.79	0.00	2.522	11.48	2.23	3.5	96.4	0.1	1.03	2.61	0.90	0.86	1.77	14152	1857	4	0	0	0	0	logfile
✔	9iZW	61044	2025-01-20	2024-08-01	3.12	3.31	3.20	3.3	0.003	0.53	1.0	0.04	14.73	0.00	1.895	3.90	1.34	4.6	95.4	0.0	-3.87	0.61	0.62	1.15	3.3	0.003	0.69	0.0	0.04	16.65	0.00	2.466	9.40	3.65	6.2	93.8	0.0	-1.24	0.69	0.72	0.81	1.53	15196	1996	4	0	0	0	0	logfile
✔	9iZV	61043	2025-01-19	2024-08-01	3.02	4.37	3.10	3.6	0.002	0.48	0.0	0.04	8.21	0.00	1.991	5.46	0.20	2.0	98.0	0.0	-0.72	0.81	0.62	1.19	3.7	0.003	0.78	0.0	0.05	14.00	0.00	2.366	12.29	2.50	4.1	95.9	0.0	0.40	1.22	0.90	0.82	1.11	14118	1857	4	0	0	0	0	logfile
✔	9iZU	61042	2025-01-14	2024-08-01	3.7	4.91	3.71	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	3.9	0.004	0.83	0.0	0.05	13.67	0.01	2.546	19.17	1.70	5.6	94.4	0.0	-0.41	2.90	0.69	0.48	-0.07	7105	933	2	0	0	0	0	logfile
✔	9CXJ	45993	2025-01-17	2024-07-31	3.1	3.43	3.24	3.5	0.004	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.61	0.0	0.04	16.52	0.00	2.011	9.14	1.42	3.3	96.7	0.0	1.54	0.35	0.64	0.75	2.07	10227	1237	6	0	4	0	0	logfile
✔	9CX9	45982	2025-01-14	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.004	0.67	0.0	0.05	16.33	0.00	2.564	6.49	6.29	4.0	96.0	0.0	-0.94	0.48	0.80	0.81	2.17	4631	609	5	0	0	0	0	logfile
✘	9CX6	45979	2025-01-14	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile
✔	9iY8	60990	2025-01-16	2024-07-30	3.01	2.61	3.03	3.1	0.003	0.79	0.0	0.05	16.61	0.01	2.102	16.87	0.30	4.4	95.6	0.0	0.01	0.82	0.83	1.96	3.1	0.004	0.75	0.0	0.05	17.08	0.00	2.482	12.46	4.92	4.7	95.3	0.0	0.06	0.41	0.82	0.83	1.93	9014	1141	5	0	0	0	0	logfile
✔	9CX3	45977	2025-01-14	2024-07-30	3.47	3.60	3.43	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.72	0.0	0.04	17.09	0.00	2.497	13.02	5.91	6.5	93.5	0.0	-1.84	0.57	0.75	0.71	2.02	5626	720	6	0	0	0	0	logfile
✔	9GAW	13931	2025-01-21	2024-07-29	2.9	2.23	2.97	2.7	0.004	0.70	0.0	0.04	15.06	0.00	2.198	11.60	0.78	3.1	96.8	0.0	1.23	0.79	0.79	2.07	2.0	0.003	0.65	0.0	0.04	17.49	0.00	2.342	9.16	2.94	2.9	97.0	0.0	1.33	0.56	0.79	0.81	2.28	66640	8600	24	0	6	0	0	logfile
✔	9GAW	51190	2025-01-21	2024-07-29	2.9	3.95	—	3.2	0.004	0.70	0.0	0.04	15.06	0.00	2.198	11.60	0.78	3.1	96.8	0.0	1.23	0.86	0.80	1.97	3.2	0.003	0.62	0.0	0.04	15.76	0.00	2.234	8.09	1.32	2.8	97.2	0.0	1.73	3.24	0.91	0.88	1.93	66640	8600	24	0	6	0	0	logfile
✔	9iXM	60973	2025-01-24	2024-07-29	3.26	3.36	—	3.2	0.004	0.95	14.0	0.06	20.10	0.01	1.655	16.20	1.97	4.6	94.7	0.7	-0.47	0.86	0.82	1.88	3.2	0.004	0.57	0.0	0.04	19.97	0.00	2.009	7.82	1.93	4.0	95.7	0.3	0.68	0.51	0.88	0.86	2.39	20925	2403	7	75	1	0	0	logfile

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