Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FGS	50420	2025-03-05	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.66	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.003	0.66	0.0	0.04	15.36	0.00	2.407	10.09	2.34	8.7	91.1	0.2	-1.54	0.97	0.78	0.81	—	3187	412	3	0	1	0	0	logfile
✔	9FGT	50424	2025-03-05	2024-05-25	3.8	4.00	3.76	3.9	0.005	0.70	0.0	0.05	14.86	0.00	2.094	7.67	0.00	7.8	92.2	0.0	-1.56	0.72	0.81	2.12	3.9	0.003	0.66	0.0	0.05	15.30	0.00	2.467	5.76	1.93	6.6	93.4	0.0	-1.61	0.97	0.72	0.80	1.95	2921	373	3	0	1	0	0	logfile
✔	9C0F	45082	2025-03-13	2024-05-25	3.6	4.55	3.56	3.5	0.026	1.89	5.0	0.11	16.99	0.01	2.314	1.58	0.34	2.2	97.7	0.1	-0.53	0.82	0.70	1.47	3.6	0.004	0.72	0.0	0.04	18.69	0.00	2.491	10.11	1.12	5.3	94.6	0.1	0.09	0.82	0.86	0.78	0.87	9507	970	6	70	4	0	0	logfile
✔	9FGR	50418	2025-03-05	2024-05-25	4.0	4.21	3.94	4.1	0.003	0.58	0.0	0.04	12.55	0.00	2.176	8.75	0.00	6.4	93.6	0.0	-1.53	0.76	0.82	—	4.1	0.003	0.67	0.0	0.04	14.55	0.00	2.593	8.11	3.19	6.7	93.3	0.0	-1.18	1.00	0.77	0.82	—	3209	412	3	0	1	1	0	logfile
✔	9FGU	50428	2025-03-05	2024-05-25	4.3	4.49	4.26	4.3	0.003	0.72	0.0	0.05	13.96	0.00	2.123	19.81	0.29	4.9	95.1	0.0	-1.32	0.75	0.70	—	4.3	0.003	0.74	0.0	0.05	13.87	0.00	2.527	14.46	0.00	6.4	93.6	0.0	-1.53	1.06	0.76	0.71	—	3241	413	3	0	1	0	0	logfile
✔	8ZMY	60262	2025-03-13	2024-05-24	2.9	2.88	2.75	3.0	0.010	0.91	0.0	0.05	15.08	0.00	2.203	20.23	0.00	4.2	95.8	0.0	-4.52	0.51	0.79	2.59	2.9	0.007	0.93	0.0	0.05	17.99	0.00	2.530	6.63	4.90	7.0	93.0	0.0	-2.97	2.47	0.59	0.91	3.91	8652	1176	19	0	27	0	0	logfile
✔	9C07	45075	2025-03-06	2024-05-24	2.73	3.55	2.71	3.3	0.004	0.58	0.0	0.04	12.73	0.01	2.267	6.41	0.23	4.1	95.9	0.0	4.88	0.75	0.89	5.06	3.3	0.003	0.57	0.0	0.03	13.68	0.00	2.526	1.50	0.23	4.7	95.3	0.0	5.00	1.92	0.60	0.81	4.47	4512	524	4	0	36	0	0	logfile
✔	9C09	45077	2025-03-06	2024-05-24	2.36	3.23	2.39	3.0	0.004	0.69	0.0	0.04	15.07	0.01	2.342	3.30	0.69	4.5	95.5	0.0	4.21	0.77	0.86	3.87	3.0	0.003	0.58	0.0	0.03	15.78	0.00	2.489	1.71	1.15	4.5	95.5	0.0	4.87	0.55	0.67	0.86	3.09	4300	514	4	0	22	0	0	logfile
✘	8ZMS	60255	2025-03-05	2024-05-23	3.7	3.97	3.82	4.0	0.007	1.15	0.0	0.05	9.68	0.01	2.349	3.51	0.00	5.0	95.0	0.0	-3.71	0.44	0.76	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2920	386	2	0	1	0	0	logfile
✔	9BYi	45034	2025-03-06	2024-05-23	2.95	3.95	2.96	3.6	0.005	0.65	0.0	0.04	15.74	0.00	2.279	2.89	0.00	5.8	94.2	0.0	4.10	0.73	0.86	2.66	3.6	0.003	0.59	0.0	0.03	15.22	0.00	2.505	1.93	1.80	5.4	94.6	0.0	5.09	1.80	0.66	0.84	2.36	4505	524	4	0	31	0	0	logfile
✔	9BXi	45005	2025-03-12	2024-05-22	2.7	2.84	2.60	2.9	0.010	1.61	0.0	0.08	10.28	0.01	1.231	13.85	0.00	6.7	93.3	0.0	-1.83	0.46	0.86	5.10	2.9	0.003	0.55	0.0	0.05	15.99	0.00	2.485	2.93	0.75	6.4	93.6	0.0	-2.03	1.67	0.46	0.88	3.87	7182	462	6	0	0	0	3654	logfile
✔	9BXo	45007	2025-03-12	2024-05-22	3.0	2.93	2.89	3.0	0.011	1.74	0.0	0.09	12.75	0.01	2.020	23.59	0.00	4.7	95.3	0.0	-1.64	0.43	0.82	5.05	2.9	0.002	0.57	0.0	0.05	15.93	0.00	2.338	3.63	1.00	2.2	97.8	0.0	-2.02	0.89	0.48	0.86	4.61	7182	462	6	0	0	0	3654	logfile
✔	9BXR	45009	2025-03-12	2024-05-22	3.2	2.90	3.15	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.002	0.60	0.0	0.05	15.26	0.00	2.415	2.51	1.00	6.7	93.3	0.0	-2.51	1.24	0.38	0.78	2.49	7184	462	6	0	0	0	3656	logfile
✔	9BXQ	45008	2025-03-12	2024-05-22	3.1	3.01	2.96	3.2	0.011	1.84	0.0	0.09	10.87	0.01	1.454	27.94	0.00	6.7	93.3	0.0	-2.37	0.30	0.68	3.66	3.2	0.003	0.60	0.0	0.05	13.43	0.00	2.481	3.35	0.00	4.2	95.8	0.0	-2.83	1.24	0.34	0.78	4.76	7182	462	6	0	0	0	3654	logfile
✔	9BWS	44978	2025-03-06	2024-05-21	2.39	3.43	2.42	3.1	0.004	0.68	0.0	0.04	14.79	0.01	2.288	2.97	0.93	4.7	95.3	0.0	4.00	0.74	0.84	3.99	3.2	0.003	0.63	0.0	0.03	15.24	0.00	2.484	2.51	0.46	4.3	95.7	0.0	4.87	2.15	0.65	0.87	3.23	4286	514	4	0	22	0	0	logfile
✔	8ZLo	60231	2025-03-06	2024-05-20	3.1	2.98	2.80	3.3	0.015	1.52	0.0	0.08	17.15	0.01	2.063	28.08	0.00	9.4	90.6	0.0	-4.08	0.25	0.57	3.84	3.1	0.007	1.04	0.0	0.06	15.05	0.00	2.596	10.09	5.70	11.0	89.0	0.0	-4.03	1.95	0.52	0.88	3.82	4816	660	18	0	10	0	0	logfile
✔	8ZLP	60232	2025-03-05	2024-05-20	3.5	3.09	3.03	3.4	0.007	0.55	0.0	0.05	12.26	0.00	2.368	4.84	0.00	4.2	95.8	0.0	-4.52	0.48	0.91	4.59	3.4	0.002	0.48	0.0	0.05	14.79	0.00	2.616	2.48	3.43	2.8	97.2	0.0	-2.90	1.91	0.47	0.90	3.82	4116	588	6	0	6	0	0	logfile
✔	9BVo	44939	2025-03-06	2024-05-20	4.4	4.59	4.23	4.5	0.003	0.64	0.0	0.08	16.83	0.01	2.321	2.66	5.68	2.7	97.3	0.0	-0.49	0.51	0.69	—	4.5	0.003	0.67	0.0	0.04	12.81	0.00	2.518	6.61	0.00	4.7	95.3	0.0	1.37	1.02	0.59	0.77	—	5469	642	5	0	8	0	0	logfile
✔	9BVQ	44941	2025-03-11	2024-05-20	3.3	3.82	3.28	3.7	0.003	0.47	0.0	0.10	15.64	0.00	2.201	2.52	1.58	1.2	98.8	0.0	0.89	0.70	0.88	3.92	3.7	0.003	0.57	0.0	0.04	13.84	0.00	2.613	2.77	0.79	3.3	96.7	0.0	2.03	1.04	0.64	0.88	3.23	5977	700	6	0	9	0	0	logfile
✔	9FEE	50339	2025-03-13	2024-05-19	3.03	3.26	3.13	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	3.3	0.003	0.57	0.0	0.04	16.12	0.00	2.575	4.46	2.82	7.4	92.6	0.0	0.49	0.92	0.74	0.85	2.54	9112	1236	4	0	0	0	0	logfile

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