Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z7L	39819	2025-03-11	2024-04-20	3.42	2.85	3.34	1.3	0.002	0.45	0.0	0.04	8.76	0.00	2.324	6.07	4.12	4.9	95.1	0.0	-2.92	0.86	0.86	3.47	1.4	0.004	0.73	0.0	0.05	13.49	0.00	2.386	7.94	4.52	5.5	94.5	0.0	-1.30	0.69	0.88	0.90	3.28	6774	843	9	0	12	0	0	logfile
✔	9BHC	44540	2025-03-14	2024-04-19	2.75	3.66	2.78	3.4	0.013	1.20	0.0	0.08	13.32	0.01	2.201	6.93	0.00	4.4	95.6	0.0	1.01	0.82	0.91	2.51	3.4	0.003	0.64	0.0	0.04	15.40	0.00	2.458	6.78	1.06	3.3	96.7	0.0	1.95	0.94	0.75	0.84	2.21	9608	1230	4	0	0	0	0	logfile
✔	8Z6X	39807	2025-03-06	2024-04-19	2.96	3.13	2.88	1.8	0.003	0.54	0.0	0.05	9.21	0.00	2.186	4.00	3.07	7.2	92.6	0.2	-2.58	0.75	0.88	4.17	1.8	0.003	0.71	0.0	0.05	13.83	0.00	2.488	5.94	3.26	7.2	92.8	0.0	-0.54	1.32	0.76	0.92	3.70	4704	618	3	0	0	0	0	logfile
✔	8Z6T	39804	2025-03-06	2024-04-19	2.92	2.31	2.90	2.1	0.005	0.63	0.0	0.05	8.85	0.00	2.196	4.27	3.78	5.3	94.4	0.4	-2.88	0.61	0.74	3.34	2.1	0.004	0.70	0.0	0.04	13.37	0.00	2.554	7.19	5.78	6.3	93.7	0.0	-0.55	0.62	0.63	0.79	3.04	4526	589	3	0	0	0	0	logfile
✔	8Z7B	39811	2025-03-14	2024-04-19	3.3	2.94	3.27	1.4	0.003	0.47	0.0	0.04	13.47	0.00	2.279	5.18	2.96	2.9	97.1	0.0	-2.05	0.93	0.88	3.76	1.4	0.004	0.74	0.0	0.05	13.76	0.00	2.498	7.10	2.17	4.4	95.6	0.0	-0.06	1.97	0.95	0.92	3.14	9580	1145	13	0	24	0	0	logfile
✔	8Z74	39810	2025-03-11	2024-04-19	3.01	2.28	3.02	2.1	0.003	0.63	0.0	0.04	14.94	0.00	2.235	13.45	0.00	3.9	96.1	0.0	0.52	0.73	0.74	2.84	2.1	0.003	0.65	0.0	0.04	15.21	0.00	2.513	10.48	2.64	3.3	96.7	0.0	0.46	0.28	0.73	0.75	2.86	6709	847	5	0	2	0	0	logfile
✔	9BHB	44539	2025-03-05	2024-04-19	3.1	3.25	2.99	3.3	0.006	0.81	0.0	0.05	13.80	0.01	2.274	5.99	0.35	6.6	93.4	0.0	-2.11	0.60	0.83	4.31	3.3	0.004	0.57	0.0	0.04	15.21	0.00	2.530	7.53	3.87	5.1	94.9	0.0	0.64	0.82	0.61	0.84	4.08	2626	328	3	0	0	0	0	logfile
✔	9BGF	44511	2025-03-12	2024-04-18	2.9	2.71	2.78	2.9	0.003	0.52	0.0	0.04	14.49	0.00	1.906	7.29	0.25	4.2	95.8	0.0	1.17	0.74	0.84	4.53	2.9	0.003	0.58	0.0	0.04	16.68	0.00	1.971	7.57	1.61	4.8	95.2	0.0	0.92	0.34	0.72	0.84	3.36	7317	857	5	0	16	0	0	logfile
✔	9BFP	44502	2025-03-12	2024-04-18	2.78	3.22	2.80	3.1	0.007	1.23	2.0	0.07	13.56	0.01	2.356	2.52	0.00	2.7	97.3	0.0	-2.06	0.72	0.83	3.43	3.1	0.003	0.60	0.0	0.04	16.26	0.00	2.603	5.22	1.71	2.5	97.5	0.0	-0.06	1.01	0.75	0.87	3.43	8263	1034	3	0	4	0	0	logfile
✔	8Z64	39791	2025-03-14	2024-04-18	3.53	2.39	3.45	2.1	0.003	0.49	0.0	0.04	10.50	0.00	2.227	6.24	3.20	4.5	95.5	0.0	-2.69	0.71	0.73	2.21	3.1	0.003	0.67	0.0	0.04	14.45	0.00	2.431	8.56	4.66	6.9	93.1	0.0	-0.78	0.64	0.74	0.75	2.25	9665	1162	11	0	21	0	0	logfile
✔	9BFR	44504	2025-03-11	2024-04-18	3.19	3.40	3.23	3.4	0.006	1.11	0.0	0.06	13.10	0.01	2.440	1.77	0.00	2.9	97.1	0.0	-4.21	0.59	0.77	2.43	3.4	0.003	0.57	0.0	0.04	15.57	0.00	2.600	5.06	2.18	3.1	96.9	0.0	-0.87	0.54	0.62	0.79	2.02	6266	766	4	0	6	0	0	logfile
✔	9BGG	44512	2025-03-12	2024-04-18	3.4	3.61	3.48	3.6	0.003	0.53	0.0	0.04	12.81	0.00	2.200	8.11	0.00	3.0	97.0	0.0	0.43	0.69	0.76	2.07	3.6	0.003	0.63	0.0	0.04	15.47	0.00	2.359	8.25	1.67	3.5	96.5	0.0	0.40	0.93	0.70	0.77	2.06	6925	835	4	0	4	0	0	logfile
✔	9BFJ	44498	2025-03-05	2024-04-17	2.35	2.59	2.47	2.6	0.005	0.65	0.0	0.04	15.09	0.01	2.196	3.24	0.00	1.0	99.0	0.0	0.78	0.61	0.86	4.12	2.6	0.003	0.51	0.0	0.04	15.39	0.00	2.248	5.71	1.50	1.4	98.6	0.0	1.94	0.26	0.61	0.87	3.19	3833	496	2	0	3	0	0	logfile
✔	8Z4E	39762	2025-03-11	2024-04-17	3.0	2.37	3.11	2.1	0.003	0.61	1.0	0.05	12.62	0.00	2.230	8.56	0.00	6.1	93.4	0.5	-0.63	0.72	0.68	3.09	2.1	0.004	0.70	0.0	0.05	14.87	0.01	2.254	9.12	2.90	7.7	91.8	0.5	-0.80	2.54	0.74	0.73	2.92	6327	821	7	0	3	0	0	logfile
✔	9BFi	44497	2025-03-05	2024-04-17	2.66	2.90	2.77	2.9	0.003	0.68	0.0	0.04	12.28	0.01	2.274	2.64	0.00	1.5	98.5	0.0	0.42	0.55	0.80	3.23	2.9	0.003	0.54	0.0	0.04	14.74	0.00	2.608	4.36	1.52	1.9	97.9	0.2	1.89	0.32	0.52	0.80	3.02	3766	489	1	0	0	0	0	logfile
✔	9F0L	50113	2025-03-11	2024-04-17	2.76	3.53	2.77	3.3	0.002	0.43	0.0	0.03	18.24	0.00	2.271	7.78	0.84	0.4	99.6	0.0	3.17	0.87	0.84	2.02	3.3	0.003	0.48	0.0	0.04	18.29	0.00	2.543	5.75	2.68	0.9	99.1	0.0	4.15	0.32	0.83	0.82	1.63	6119	791	1	0	0	0	0	logfile
✔	9BEi	44479	2025-03-11	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.002	0.72	0.0	0.04	14.43	0.00	2.455	13.44	0.00	7.6	92.3	0.1	-1.22	0.45	0.84	0.72	—	6649	862	5	0	0	0	0	logfile
✔	9BEE	44477	2025-03-05	2024-04-15	3.4	3.98	3.20	3.9	0.013	1.84	1.0	0.10	11.72	0.02	2.467	4.56	0.00	11.9	88.1	0.0	-2.32	0.47	0.59	1.69	3.9	0.002	0.57	0.0	0.05	15.77	0.00	2.346	6.84	3.45	4.9	95.1	0.0	-0.50	1.59	0.50	0.68	2.14	3046	189	2	0	7	0	1501	logfile
✔	8Z1V	39737	2025-03-14	2024-04-12	3.16	2.44	3.14	2.1	0.025	2.21	84.0	0.24	12.47	0.01	2.288	0.52	0.00	0.7	99.3	0.0	-0.95	0.68	0.72	3.64	2.2	0.003	0.62	0.0	0.04	16.06	0.00	2.524	5.06	2.05	1.7	98.3	0.0	1.47	1.17	0.78	0.81	2.43	9562	1234	6	0	2	0	0	logfile
✔	8Z1E	39724	2025-03-11	2024-04-11	3.12	3.44	3.19	3.4	0.002	0.43	0.0	0.03	14.56	0.00	2.273	4.34	0.44	1.2	98.8	0.0	0.87	0.57	0.82	1.73	3.4	0.003	0.52	0.0	0.04	15.31	0.00	2.470	4.95	4.51	1.6	98.4	0.0	2.34	0.32	0.65	0.86	1.59	6516	834	3	0	0	0	0	logfile

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