Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JE0	61403	2025-03-05	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.70	0.0	0.04	15.99	0.00	2.607	8.81	2.03	2.6	97.4	0.0	2.02	0.63	0.44	0.71	1.00	3321	435	2	0	1	1	0	logfile
✔	9JDV	61399	2025-03-05	2024-09-01	3.32	3.91	3.55	3.9	0.006	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.004	0.74	0.0	0.04	16.35	0.00	2.281	10.48	4.06	2.6	97.4	0.0	1.92	1.08	0.48	0.73	1.28	3311	435	2	0	1	1	0	logfile
✔	9JDB	61387	2025-03-11	2024-08-31	2.64	2.91	2.73	2.9	0.007	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.003	0.67	0.0	0.04	17.78	0.00	2.603	3.49	1.13	1.6	98.4	0.0	0.47	0.20	0.70	0.86	4.00	6592	808	4	0	2	0	0	logfile
✔	9JBP	61322	2025-03-05	2024-08-27	3.18	2.96	1.87	4.1	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.003	0.58	0.0	0.05	17.44	0.00	2.560	6.57	7.53	3.0	97.0	0.0	-1.64	1.16	0.32	0.70	2.98	2022	246	12	0	48	0	0	logfile
✔	9JBo	61321	2025-03-05	2024-08-27	3.39	3.02	2.39	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.005	0.82	0.0	0.06	18.87	0.00	2.547	8.01	4.35	13.4	86.6	0.0	-2.23	1.04	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JA6	61291	2025-03-06	2024-08-24	4.4	3.40	4.32	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.3	0.003	0.63	0.0	0.04	13.21	0.00	2.395	8.40	0.00	1.2	98.8	0.0	3.19	1.55	0.71	0.77	—	4880	588	4	0	0	0	0	logfile
✔	9JA5	61290	2025-03-13	2024-08-24	2.7	3.43	2.70	3.3	0.014	1.15	0.0	0.06	14.30	0.01	2.117	13.83	0.00	12.9	87.1	0.0	-2.73	0.62	0.83	2.49	3.3	0.003	0.70	0.0	0.04	18.06	0.00	2.588	7.64	1.92	7.0	93.0	0.0	1.84	0.97	0.54	0.75	1.19	8469	1002	12	0	0	123	0	logfile
✔	9DAK	46691	2025-03-12	2024-08-22	2.4	2.74	2.43	2.6	0.011	1.22	0.0	0.09	13.17	0.00	1.935	1.68	0.47	1.5	98.5	0.0	0.51	0.78	0.84	4.93	2.6	0.003	0.64	0.0	0.04	14.22	0.00	2.278	2.78	0.94	1.0	99.0	0.0	2.01	0.47	0.71	0.83	4.09	7303	899	13	0	23	144	0	logfile
✔	9J8P	61237	2025-03-11	2024-08-21	3.21	3.65	—	1.5	0.006	0.90	0.0	0.05	20.97	0.01	2.235	10.53	0.00	5.4	94.6	0.0	-0.46	0.92	0.83	1.79	1.5	0.004	0.71	0.0	0.04	21.60	0.00	2.340	12.60	1.35	3.9	96.1	0.0	0.22	2.59	0.93	0.86	1.50	7061	623	3	106	1	0	0	logfile
✔	9D8P	46645	2025-03-05	2024-08-19	3.2	3.70	3.12	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.78	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.004	0.55	0.0	0.04	15.75	0.00	2.484	6.39	2.91	2.9	97.1	0.0	0.09	0.20	0.80	0.85	3.24	4073	537	4	0	0	0	0	logfile
✔	9J7V	61211	2025-03-05	2024-08-19	3.3	3.54	3.37	3.6	0.007	0.97	0.0	0.04	16.85	0.00	2.210	2.17	0.00	4.6	95.4	0.0	1.94	0.60	0.84	1.45	3.6	0.003	0.47	0.0	0.04	16.04	0.00	2.635	1.84	0.65	3.1	96.9	0.0	2.06	0.24	0.58	0.84	1.59	2975	352	2	0	8	0	0	logfile
✔	9D85	46630	2025-03-12	2024-08-18	3.59	3.91	3.63	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.003	0.82	0.0	0.04	21.53	0.00	2.195	16.56	2.44	4.2	95.8	0.0	-1.31	1.59	0.74	0.58	0.76	7201	739	5	65	0	0	0	logfile
✔	9D7K	46607	2025-03-05	2024-08-16	3.0	2.55	3.03	2.9	0.002	0.55	0.0	0.04	17.29	0.00	2.308	9.53	1.60	3.1	96.9	0.0	0.63	0.65	0.67	2.01	2.2	0.004	0.89	0.0	0.05	18.71	0.01	2.501	18.53	4.15	4.8	95.2	0.0	0.39	1.35	0.66	0.72	1.98	2843	359	1	0	0	0	0	logfile
✔	9D6F	46596	2025-03-06	2024-08-15	4.24	4.50	4.13	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.003	0.67	0.0	0.04	14.19	0.00	2.557	6.22	0.00	6.9	93.1	0.0	-1.80	0.48	0.69	0.77	—	4672	610	5	0	0	0	0	logfile
✔	9D67	46588	2025-03-13	2024-08-14	2.87	3.10	1.44	3.2	0.003	0.60	0.0	0.04	16.10	0.01	2.143	4.81	0.00	2.1	97.9	0.0	0.93	0.52	0.74	2.24	3.2	0.003	0.57	0.0	0.04	16.30	0.00	2.166	8.46	2.08	1.6	98.4	0.0	1.68	1.18	0.64	0.81	2.68	9297	1218	9	0	15	3	0	logfile
✔	9D6A	46591	2025-03-05	2024-08-14	2.6	2.76	2.61	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.50	0.0	0.04	16.59	0.00	2.182	6.27	1.18	1.5	98.5	0.0	2.16	0.35	0.50	0.86	3.05	3105	407	3	0	4	9	0	logfile
✔	9D68	46589	2025-03-05	2024-08-14	2.58	2.77	2.59	2.8	0.003	0.55	0.0	0.04	16.08	0.00	2.112	3.30	0.28	1.0	99.0	0.0	1.51	0.51	0.87	3.43	2.8	0.003	0.52	0.0	0.04	16.78	0.00	2.143	6.90	2.26	0.7	99.3	0.0	2.14	0.31	0.49	0.86	2.94	3242	426	3	0	2	6	0	logfile
✔	9D66	46586	2025-03-13	2024-08-14	2.98	3.18	2.93	3.2	0.004	0.68	0.0	0.04	13.81	0.00	2.055	3.35	0.00	1.8	98.2	0.0	-1.67	0.58	0.79	3.71	3.2	0.003	0.55	0.0	0.04	15.39	0.00	2.190	7.00	2.66	1.2	98.8	0.0	1.76	0.53	0.63	0.82	2.37	9306	1221	10	0	12	12	0	logfile
✔	9D61	46585	2025-03-12	2024-08-14	3.58	3.05	—	3.8	0.004	0.74	0.0	0.05	12.93	0.00	2.249	5.72	0.00	6.7	93.3	0.0	-1.57	0.67	0.63	0.77	3.8	0.004	0.76	0.0	0.04	16.22	0.00	2.482	12.91	3.03	6.3	93.7	0.0	-0.47	0.90	0.69	0.66	1.38	6895	903	5	0	1	0	0	logfile
✔	9D69	46590	2025-03-05	2024-08-14	2.99	3.21	3.06	3.2	0.003	0.55	0.0	0.04	15.99	0.01	2.096	3.87	0.00	1.7	98.3	0.0	0.78	0.46	0.84	3.65	3.2	0.003	0.59	0.0	0.04	16.66	0.00	2.243	7.43	2.33	2.2	97.8	0.0	2.13	0.94	0.42	0.82	2.51	3143	413	3	0	4	0	0	logfile

• ← previous
• Page 4 of 219
• next →