Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CXF	45988	2025-03-06	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.799	6.03	0.00	0.0	0.0	0.0	—	0.37	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✔	9iYX	61003	2025-03-05	2024-07-31	3.6	3.14	2.42	3.2	0.004	0.78	1.0	0.04	12.81	0.01	2.132	11.46	0.40	2.7	97.3	0.0	1.26	0.44	0.67	2.43	3.2	0.003	0.66	0.0	0.04	14.47	0.01	2.620	6.72	3.56	1.5	98.5	0.0	3.10	1.63	0.45	0.71	2.35	2626	351	4	0	2	0	0	logfile
✔	9CX3	45977	2025-03-06	2024-07-30	3.47	3.60	3.42	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.005	0.74	0.0	0.04	16.79	0.00	2.498	13.20	4.27	5.9	94.1	0.0	-1.72	0.55	0.74	0.71	1.79	5626	720	6	0	0	0	0	logfile
✘	9iY8	60990	2025-03-13	2024-07-30	3.01	2.61	3.04	3.1	0.003	0.79	0.0	0.05	16.61	0.01	2.102	16.87	0.30	4.4	95.6	0.0	0.01	0.82	0.83	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9014	1141	5	0	0	0	0	logfile
✔	9G9X	51160	2025-03-05	2024-07-25	3.13	3.60	3.08	3.5	0.007	0.75	0.0	0.05	11.30	0.01	2.404	1.01	0.00	0.8	99.2	0.0	-1.06	0.49	0.78	4.25	3.5	0.003	0.51	0.0	0.04	13.14	0.00	2.598	1.77	1.03	2.9	97.1	0.0	4.28	0.94	0.46	0.75	2.58	3955	488	4	0	7	0	0	logfile
✔	9CTG	45906	2025-03-13	2024-07-25	3.4	3.21	3.42	3.5	0.004	0.60	0.0	0.04	16.15	0.00	1.927	7.52	0.11	3.0	97.0	0.0	0.52	0.62	0.80	1.92	3.5	0.005	0.90	0.0	0.04	17.32	0.00	1.627	7.68	2.54	3.6	96.4	0.0	0.87	0.49	0.64	0.82	2.00	9128	1157	2	0	13	0	0	logfile
✔	9iW3	60944	2025-03-12	2024-07-25	3.58	4.09	3.62	3.8	0.005	0.91	2.0	0.06	23.44	0.00	1.930	22.54	2.34	6.8	92.8	0.4	-0.43	0.83	0.77	2.86	3.9	0.003	0.65	0.0	0.04	23.29	0.00	1.957	9.51	1.09	5.9	93.7	0.4	0.46	1.13	0.84	0.83	2.78	6879	712	5	51	1	0	0	logfile
✔	9G9W	51159	2025-03-05	2024-07-25	2.48	3.01	2.48	3.0	0.007	0.72	0.0	0.05	11.38	0.01	2.295	1.11	0.00	0.4	99.6	0.0	0.55	0.47	0.78	5.21	3.0	0.005	0.53	0.0	0.04	13.57	0.00	2.650	2.72	0.00	1.2	98.8	0.0	4.49	0.89	0.49	0.80	3.15	4089	516	4	0	9	0	0	logfile
✔	9G9V	51158	2025-03-05	2024-07-25	3.32	3.86	3.31	3.7	0.007	0.75	0.0	0.05	11.17	0.00	2.245	1.73	0.53	1.5	98.5	0.0	-0.06	0.48	0.77	4.24	3.7	0.003	0.59	0.0	0.04	12.85	0.00	2.601	2.35	1.58	1.0	99.0	0.0	4.08	1.01	0.50	0.78	3.08	4073	522	4	0	9	0	0	logfile
✔	9CTF	45904	2025-03-14	2024-07-25	3.9	3.87	3.93	4.0	0.002	0.49	0.0	0.04	15.18	0.00	2.210	9.47	0.52	2.5	97.4	0.1	1.77	0.61	0.75	0.89	4.0	0.003	0.62	0.0	0.04	14.92	0.00	2.422	10.04	2.40	3.3	96.7	0.0	1.61	0.60	0.64	0.77	1.21	9398	1158	2	0	24	0	0	logfile
✔	9iVG	60927	2025-03-13	2024-07-23	3.0	3.73	3.06	3.5	0.003	0.56	0.0	0.04	18.21	0.00	2.127	7.87	3.98	5.1	94.7	0.2	0.58	0.75	0.87	2.24	3.5	0.003	0.71	0.0	0.04	18.00	0.00	2.436	6.90	2.49	5.2	94.6	0.2	0.81	0.69	0.67	0.80	2.32	9325	1170	6	0	0	0	0	logfile
✔	9iVK	60929	2025-03-06	2024-07-23	2.74	3.03	2.77	3.0	0.006	0.86	0.0	0.06	14.94	0.00	2.231	9.92	0.69	2.0	98.0	0.0	1.92	0.59	0.74	2.64	3.0	0.003	0.56	0.0	0.04	17.17	0.00	2.572	6.25	1.61	1.8	98.2	0.0	2.84	1.25	0.61	0.78	2.35	4077	507	4	0	1	0	0	logfile
✔	9iUU	60914	2025-03-11	2024-07-22	3.29	3.45	3.35	3.5	0.006	0.85	1.0	0.05	16.62	0.01	2.254	9.61	0.86	4.6	95.4	0.0	-0.39	0.67	0.85	2.48	3.5	0.002	0.54	0.0	0.04	16.46	0.00	2.510	6.77	2.88	3.7	96.3	0.0	0.53	0.88	0.64	0.84	2.25	6513	791	4	0	8	0	0	logfile
✔	9iUP	60911	2025-03-11	2024-07-22	3.3	3.49	3.27	3.5	0.005	0.73	3.0	0.05	16.87	0.00	2.136	8.46	0.14	3.1	96.9	0.0	0.54	0.66	0.83	2.40	3.5	0.003	0.57	0.0	0.04	17.13	0.00	2.477	6.30	2.89	3.4	96.6	0.0	0.68	0.23	0.67	0.85	2.12	6420	787	3	0	2	0	0	logfile
✔	9iUQ	60912	2025-03-11	2024-07-22	3.3	3.52	3.23	3.5	0.006	0.84	2.0	0.05	18.19	0.01	2.253	6.40	0.72	3.2	96.8	0.0	0.27	0.66	0.83	2.01	3.5	0.003	0.57	0.0	0.04	18.33	0.00	2.499	6.48	2.90	3.5	96.5	0.0	1.01	1.26	0.66	0.87	1.72	6399	784	3	0	2	0	0	logfile
✔	9iV2	60918	2025-03-11	2024-07-22	3.53	4.14	3.44	3.9	0.002	0.54	0.0	0.04	17.47	0.00	2.186	8.42	0.00	5.1	94.9	0.0	-0.13	0.71	0.84	0.91	3.9	0.003	0.57	0.0	0.04	17.66	0.00	2.545	6.37	4.76	5.5	94.5	0.0	-0.27	0.26	0.71	0.84	0.84	6732	892	5	0	1	0	0	logfile
✔	9iUZ	60916	2025-03-12	2024-07-22	3.19	3.81	3.33	3.7	0.002	0.56	0.0	0.04	18.04	0.00	2.226	7.81	0.55	3.4	96.6	0.0	1.40	0.75	0.73	1.79	3.7	0.003	0.60	0.0	0.04	18.16	0.00	2.485	5.59	2.22	3.5	96.5	0.0	1.45	0.93	0.75	0.82	1.51	8349	1061	5	0	2	0	0	logfile
✔	9iV1	60917	2025-03-12	2024-07-22	2.98	2.31	3.06	2.1	0.006	0.86	1.0	0.05	16.44	0.00	2.181	13.35	4.62	7.5	91.7	0.8	-1.29	0.79	0.80	2.60	2.1	0.004	0.72	0.0	0.04	16.35	0.00	2.484	8.59	4.38	7.9	92.0	0.1	-0.78	0.37	0.79	0.80	2.36	8284	1109	6	0	1	0	0	logfile
✔	9CR8	45854	2025-03-13	2024-07-21	3.8	3.66	3.65	3.7	0.003	0.49	0.0	0.04	12.79	0.00	2.219	7.50	0.22	6.6	93.4	0.0	0.48	0.63	0.77	1.73	3.7	0.003	0.56	0.0	0.04	15.27	0.00	2.515	6.71	3.25	6.3	93.7	0.0	1.12	0.47	0.66	0.77	1.42	8664	1087	2	0	15	0	0	logfile
✔	9CR4	45832	2025-03-13	2024-07-20	2.81	2.35	2.85	2.1	0.003	0.56	0.0	0.05	9.52	0.00	2.190	7.48	0.00	7.7	92.3	0.0	-0.39	0.75	0.75	2.65	2.2	0.003	0.66	0.0	0.05	14.44	0.01	2.321	9.83	3.11	7.5	92.5	0.0	0.10	0.56	0.75	0.75	2.18	9099	1179	4	0	0	0	0	logfile

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