Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MW6	48678	2025-04-27	2025-01-16	3.4	4.48	3.46	4.2	0.004	0.62	0.0	0.04	17.58	0.00	2.098	12.23	2.43	6.4	93.6	0.0	-0.15	0.78	0.78	1.20	4.1	0.002	0.63	0.0	0.04	17.85	0.00	2.568	8.70	1.83	6.8	93.2	0.0	0.05	0.93	0.78	0.78	1.28	5473	535	3	54	0	0	0	logfile
✔	9MW7	48691	2025-04-27	2025-01-16	3.4	4.43	3.48	3.9	0.008	0.62	0.0	0.04	18.41	0.00	2.138	15.61	1.01	9.2	90.6	0.2	-1.07	0.83	0.66	0.86	3.9	0.003	0.66	0.0	0.04	18.77	0.00	1.895	13.33	1.22	9.2	90.4	0.4	-1.39	1.00	0.84	0.67	1.05	5504	535	4	54	2	0	0	logfile
✔	9MUo	48639	2025-04-29	2025-01-14	3.3	3.88	3.31	3.7	0.005	0.81	0.0	0.05	17.64	0.01	2.216	14.39	1.45	5.3	94.3	0.4	-0.28	0.61	0.85	1.70	3.7	0.003	0.71	0.0	0.05	17.56	0.00	2.453	13.13	3.90	4.6	95.4	0.0	0.49	1.04	0.61	0.87	2.13	8410	1012	7	8	1	0	0	logfile
✔	9MUE	48630	2025-04-29	2025-01-13	4.0	4.21	3.13	4.2	0.005	0.81	0.0	0.05	18.80	0.01	2.101	15.54	1.00	4.9	94.5	0.6	0.03	0.66	0.86	—	4.2	0.003	0.68	0.0	0.04	18.41	0.00	2.528	11.37	2.78	6.2	93.8	0.0	-0.02	0.92	0.67	0.87	—	8438	1012	8	8	2	0	0	logfile
✔	9MTY	48616	2025-04-28	2025-01-12	3.05	2.52	2.94	2.9	0.009	1.16	0.0	0.08	21.34	0.01	2.052	2.43	0.39	2.4	97.2	0.3	-0.43	0.62	0.73	3.83	2.9	0.004	0.65	0.0	0.04	23.20	0.00	2.187	7.44	1.76	2.4	97.6	0.0	2.44	1.50	0.63	0.76	3.45	7106	586	9	112	4	0	0	logfile
✔	9LGW	63074	2025-04-30	2025-01-10	2.7	2.88	2.71	2.9	0.004	0.59	0.0	0.05	14.83	0.00	2.279	4.69	1.62	5.2	94.8	0.0	-1.08	0.59	0.70	2.61	2.9	0.003	0.55	0.0	0.05	15.45	0.00	2.266	4.69	1.62	6.0	94.0	0.0	-0.69	0.38	0.59	0.70	2.55	10043	603	2	0	0	0	5083	logfile
✔	9LGM	63068	2025-04-28	2025-01-10	2.84	2.19	2.85	1.9	0.004	0.61	0.0	0.04	16.71	0.00	2.028	13.12	0.24	2.9	97.1	0.0	0.64	0.80	0.81	3.05	1.9	0.004	0.63	0.0	0.04	17.27	0.00	2.439	9.00	4.52	3.1	96.9	0.0	0.88	1.10	0.79	0.81	2.78	8061	1049	5	0	0	0	0	logfile
✔	9MS8	48568	2025-04-30	2025-01-09	3.73	4.13	3.84	4.0	0.003	0.75	0.0	0.04	16.24	0.00	2.522	7.79	1.12	8.0	92.0	0.0	-0.91	0.65	0.82	2.19	4.0	0.003	0.75	0.0	0.04	17.09	0.00	2.428	9.57	4.06	7.6	92.4	0.0	-0.11	0.96	0.66	0.82	1.91	9290	1189	3	0	0	0	0	logfile
✔	9HXA	52458	2025-04-26	2025-01-07	3.7	3.04	3.74	3.4	0.006	0.81	0.0	0.06	10.52	0.00	2.589	0.00	0.00	6.7	93.3	0.0	-2.61	0.24	0.67	5.09	3.7	0.003	0.64	0.0	0.05	15.26	0.00	2.659	7.50	10.47	9.2	90.8	0.0	-2.21	0.83	0.24	0.67	4.86	848	124	2	0	0	0	0	logfile
✔	9MQY	48544	2025-04-27	2025-01-06	3.0	3.64	3.04	3.5	0.007	0.75	0.0	0.05	12.52	0.01	2.375	0.79	0.67	2.6	97.4	0.0	-1.16	0.76	0.87	6.11	3.5	0.005	0.60	0.0	0.05	13.51	0.00	2.603	2.67	2.00	1.6	98.4	0.0	0.80	1.34	0.74	0.87	5.58	6448	894	4	0	2	0	0	logfile
✔	9LDR	63006	2025-04-28	2025-01-06	3.58	3.81	3.54	3.8	0.007	0.84	0.0	0.04	15.48	0.00	2.184	14.85	1.77	8.7	91.3	0.0	-2.99	0.65	0.83	1.44	3.8	0.003	0.67	0.0	0.04	16.36	0.00	2.523	7.66	2.53	5.1	94.9	0.0	0.58	0.98	0.63	0.78	0.64	7274	935	3	0	0	0	0	logfile
✔	9LBS	62955	2025-04-30	2025-01-03	3.41	2.53	3.40	2.2	0.004	0.77	0.0	0.05	17.05	0.01	2.215	8.06	0.69	12.1	87.5	0.5	-3.57	0.68	0.70	1.51	2.2	0.003	0.68	0.0	0.04	17.21	0.00	2.494	7.38	4.29	12.0	87.9	0.1	-3.11	0.31	0.70	0.73	1.45	6730	867	8	0	3	0	0	logfile
✔	9MQH	48524	2025-04-26	2025-01-03	3.9	4.08	3.69	4.0	0.003	0.59	0.0	0.04	15.16	0.00	2.206	4.68	3.92	3.2	96.8	0.0	1.41	0.55	0.80	1.35	4.0	0.003	0.56	0.0	0.04	16.02	0.00	2.638	4.44	5.39	2.9	97.1	0.0	2.34	0.36	0.54	0.79	0.74	2074	281	1	0	0	0	0	logfile
✔	9LAE	62925	2025-04-27	2025-01-02	3.46	3.62	3.40	3.6	0.006	0.75	0.0	0.05	13.67	0.00	2.120	8.61	0.00	8.0	91.8	0.2	-3.66	0.52	0.71	3.84	3.6	0.005	1.46	2.0	0.05	16.38	0.00	2.074	9.12	3.47	7.4	92.6	0.0	-1.63	0.42	0.71	0.88	3.53	5000	645	6	0	1	0	0	logfile
✔	9MQ6	48514	2025-04-30	2025-01-02	3.3	3.80	3.20	3.6	0.003	0.47	0.0	0.04	10.60	0.00	2.234	4.50	0.48	4.9	95.1	0.0	0.81	0.62	0.88	1.91	3.6	0.004	0.67	0.0	0.04	14.28	0.00	2.435	5.82	1.14	5.6	94.4	0.0	1.27	1.05	0.62	0.89	1.76	9917	1252	5	0	4	0	0	logfile
✔	9HVW	52444	2025-04-29	2025-01-02	3.1	3.42	3.15	3.4	0.004	0.82	0.0	0.05	16.16	0.01	2.573	6.17	1.53	4.7	95.3	0.0	-2.70	0.56	0.61	0.92	3.4	0.004	0.62	0.0	0.04	17.17	0.00	2.520	12.01	4.31	5.0	95.0	0.0	-1.78	1.12	0.64	0.75	2.14	8950	1149	8	0	0	0	0	logfile
✔	9L9P	62912	2025-04-30	2024-12-30	4.3	4.10	3.70	4.0	0.010	1.11	0.0	0.05	16.92	0.00	2.218	10.26	0.37	10.1	88.7	1.2	-1.91	0.42	0.71	—	4.0	0.010	0.93	0.0	0.05	14.16	0.00	2.506	10.21	0.00	12.2	87.2	0.6	-1.89	0.69	0.44	0.80	—	9999	1274	6	0	1	0	0	logfile
✔	9HVC	52431	2025-04-26	2024-12-26	2.24	2.61	2.27	2.8	0.006	1.61	0.0	0.04	19.50	0.01	2.184	4.45	0.00	0.0	100.0	0.0	2.75	0.18	0.58	1.04	2.6	0.003	0.44	0.0	0.04	17.64	0.00	2.629	4.45	1.96	3.0	97.0	0.0	3.88	1.01	0.25	0.86	4.07	578	69	2	0	1	31	0	logfile
✘	9MNY	48443	2025-04-27	2024-12-24	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5332	675	7	0	1	0	0	logfile
✔	9L6C	62852	2025-04-30	2024-12-24	3.33	2.45	3.21	2.2	0.002	0.58	0.0	0.04	15.30	0.00	2.255	6.93	0.27	5.5	94.2	0.3	-1.01	0.69	0.74	2.79	2.1	0.004	0.60	0.0	0.04	15.77	0.00	2.581	6.18	3.57	7.1	92.7	0.2	-1.06	0.31	0.71	0.78	3.31	6766	874	8	0	2	0	0	logfile

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