Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DQY	47118	2025-05-21	2024-09-24	2.8	3.39	2.63	3.0	0.004	0.79	0.0	0.05	12.44	0.01	2.216	5.92	0.00	4.7	95.2	0.1	-0.52	0.62	0.88	3.63	3.0	0.004	0.66	0.0	0.05	14.29	0.00	2.446	6.37	1.26	4.8	95.1	0.1	-0.11	0.38	0.63	0.88	3.62	21667	2776	15	0	12	0	0	logfile
✔	9JNX	61630	2025-05-18	2024-09-24	3.0	3.52	3.07	3.2	0.006	0.69	1.0	0.04	26.30	0.00	1.990	11.19	0.17	7.3	92.6	0.2	-0.07	0.88	0.86	2.01	3.2	0.003	0.64	0.0	0.04	26.83	0.00	2.042	8.18	2.17	6.0	93.9	0.1	1.16	0.39	0.88	0.87	1.41	16809	1346	12	292	2	0	0	logfile
✔	9JNU	61627	2025-05-17	2024-09-24	2.5	3.28	2.53	3.0	0.006	0.71	0.0	0.04	27.46	0.00	1.978	10.89	2.55	3.2	96.6	0.2	0.87	0.87	0.85	2.55	3.0	0.004	0.63	0.0	0.04	26.88	0.00	1.978	7.21	2.37	3.0	97.0	0.0	1.71	0.29	0.86	0.84	2.22	16310	1286	12	292	2	0	0	logfile
✔	9Jo2	61641	2025-05-17	2024-09-24	3.0	3.52	3.11	3.2	0.010	0.84	1.0	0.05	27.13	0.01	1.990	15.93	0.18	9.1	90.6	0.3	-0.79	0.86	0.84	1.77	3.2	0.004	0.69	0.0	0.04	26.73	0.00	2.509	10.45	1.28	6.6	93.3	0.1	0.83	1.50	0.87	0.87	1.71	16225	1279	12	292	1	0	0	logfile
✔	9DQX	47117	2025-05-28	2024-09-24	3.4	2.45	3.29	2.1	0.004	0.88	0.0	0.06	12.54	0.01	2.196	6.86	0.00	5.9	94.0	0.1	-1.44	0.48	0.74	2.67	2.1	0.004	0.78	0.0	0.05	15.75	0.01	2.346	12.95	4.06	6.2	93.8	0.1	-1.09	0.52	0.49	0.76	2.36	30900	3995	20	0	12	0	0	logfile
✔	9GVJ	51636	2025-05-19	2024-09-24	2.91	3.20	2.84	3.1	0.002	0.52	0.0	0.04	15.91	0.00	2.184	5.74	2.22	3.2	96.8	0.0	0.26	0.73	0.90	3.60	3.1	0.006	0.63	0.0	0.05	15.91	0.00	2.053	3.93	1.70	3.9	96.1	0.0	0.20	0.20	0.73	0.90	3.58	17636	2304	12	0	14	177	0	logfile
✔	9DQV	47116	2025-05-30	2024-09-24	3.3	2.37	3.19	1.9	0.004	0.90	0.0	0.06	12.77	0.01	2.215	7.73	0.00	6.1	93.8	0.0	-1.46	0.51	0.75	2.77	2.0	0.007	0.80	0.0	0.05	15.49	0.01	2.355	13.69	3.96	7.3	92.7	0.0	-1.14	0.45	0.53	0.78	2.75	33701	4330	24	0	16	0	0	logfile
✔	9DQZ	47119	2025-05-30	2024-09-24	2.9	2.34	2.65	2.0	0.004	0.82	0.0	0.05	12.29	0.01	2.175	6.34	0.00	5.9	94.0	0.1	-0.90	0.58	0.80	3.46	2.0	0.004	0.70	0.0	0.05	15.68	0.00	2.205	8.87	3.05	6.0	93.9	0.0	-0.28	0.41	0.59	0.81	3.22	33465	4327	28	0	24	0	0	logfile
✔	9JNZ	61632	2025-05-17	2024-09-24	3.0	3.56	3.08	3.2	0.005	0.69	1.0	0.04	26.60	0.00	2.171	12.23	0.54	5.2	94.7	0.1	-0.14	0.88	0.87	2.26	3.2	0.003	0.68	0.0	0.04	26.89	0.00	2.464	9.19	1.54	5.0	95.0	0.0	1.13	1.58	0.88	0.87	1.65	16323	1291	12	292	1	0	0	logfile
✔	9JoD	61659	2025-05-18	2024-09-24	3.2	3.24	2.96	3.2	0.005	0.69	0.0	0.05	15.83	0.00	2.208	4.49	1.39	4.3	95.7	0.0	-1.39	0.60	0.90	3.25	3.2	0.002	0.51	0.0	0.04	16.12	0.00	2.506	3.15	1.39	1.9	98.1	0.0	-0.21	0.44	0.58	0.89	3.33	16849	2135	7	0	0	0	0	logfile
✔	9DR1	47120	2025-05-25	2024-09-24	3.7	3.74	3.38	3.6	0.005	0.56	0.0	0.04	19.30	0.00	2.083	10.83	0.33	3.3	96.7	0.0	0.65	0.83	0.83	1.43	3.6	0.003	0.67	1.0	0.04	19.65	0.00	2.038	8.57	3.29	2.6	97.4	0.0	0.78	1.06	0.84	0.84	1.55	26245	3173	9	69	1	0	0	logfile
✔	9JNW	61629	2025-05-18	2024-09-24	2.9	3.55	2.96	3.2	0.008	0.78	0.0	0.04	26.52	0.00	1.968	15.11	0.08	7.2	92.5	0.3	-0.18	0.84	0.85	2.31	3.2	0.004	0.65	0.0	0.04	26.48	0.00	2.013	10.11	2.20	6.2	93.8	0.0	0.93	0.43	0.84	0.85	1.33	17087	1372	12	294	2	0	0	logfile
✔	9JNP	61624	2025-05-17	2024-09-23	2.3	3.23	2.38	2.9	0.008	0.75	0.0	0.04	26.69	0.01	2.067	7.38	1.45	3.8	96.2	0.0	0.83	0.87	0.86	3.01	2.9	0.006	0.61	0.0	0.04	26.21	0.00	2.074	5.66	2.22	2.9	97.1	0.0	2.06	0.29	0.88	0.87	3.07	15781	1221	12	292	2	0	0	logfile
✔	9JMZ	61616	2025-05-14	2024-09-22	2.91	4.17	2.98	3.5	0.004	0.90	0.0	0.05	14.15	0.00	2.176	5.57	0.78	3.7	96.3	0.0	0.45	0.92	0.90	3.46	3.5	0.003	0.66	0.0	0.04	14.25	0.00	2.500	3.74	1.32	3.8	96.2	0.0	0.33	0.76	0.92	0.90	3.54	12001	1459	12	0	22	0	0	logfile
✘	9DPL	47106	2025-05-19	2024-09-22	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10555	1092	10	76	6	0	0	logfile
✔	9JN0	61617	2025-05-14	2024-09-22	2.84	3.91	2.92	3.4	0.003	0.71	0.0	0.05	14.14	0.00	2.199	4.38	0.70	3.5	96.5	0.0	0.44	0.90	0.89	3.49	3.4	0.003	0.64	0.0	0.04	14.14	0.00	2.529	3.02	1.09	5.2	94.8	0.0	0.38	0.30	0.90	0.89	3.67	12001	1459	11	0	22	0	0	logfile
✔	9DPE	47104	2025-05-14	2024-09-21	3.86	4.57	3.79	3.9	0.002	0.45	0.0	0.04	7.39	0.00	2.119	3.63	0.15	1.8	98.2	0.0	1.23	0.86	0.79	2.16	3.9	0.003	0.55	0.0	0.04	11.10	0.00	2.474	4.47	1.36	3.9	96.1	0.0	0.13	0.82	0.87	0.81	2.39	11800	779	5	0	4	0	5786	logfile
✔	9GUR	51617	2025-05-25	2024-09-20	4.2	4.93	4.48	4.2	0.003	0.63	0.0	0.05	15.21	0.00	1.737	6.42	2.62	5.9	94.0	0.1	-1.13	0.88	0.83	—	4.2	0.003	0.69	0.0	0.04	15.53	0.00	2.019	11.74	0.00	5.2	94.7	0.1	-0.05	0.71	0.89	0.84	—	27128	3271	10	73	3	0	0	logfile
✔	9DPA	47100	2025-05-17	2024-09-20	3.0	3.66	3.07	3.5	0.007	0.83	0.0	0.05	20.54	0.01	2.196	10.74	1.56	3.6	96.4	0.0	-0.62	0.83	0.83	2.66	3.5	0.003	0.67	0.0	0.04	20.48	0.00	2.494	7.09	1.78	3.8	96.2	0.0	0.13	1.14	0.84	0.85	2.27	9878	1013	7	76	3	0	0	logfile
✔	9DPC	47102	2025-05-15	2024-09-20	2.65	2.16	2.66	1.9	0.004	0.65	1.0	0.05	16.56	0.00	2.198	8.29	2.95	5.1	94.9	0.0	-1.16	0.82	0.83	3.47	1.9	0.005	0.66	0.0	0.05	16.65	0.00	2.498	7.17	2.95	5.4	94.6	0.0	-1.14	0.22	0.82	0.83	3.73	13370	1777	6	0	0	0	0	logfile

• ← previous
• Page 18 of 680
• next →