Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JJi	61528	2025-05-13	2024-09-13	3.4	2.52	3.40	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.004	0.65	0.0	0.05	14.91	0.01	2.493	4.06	2.95	2.6	97.4	0.0	-0.62	2.00	0.61	0.82	3.27	10021	1332	4	0	0	0	0	logfile
✔	9Ji2	61492	2025-05-25	2024-09-11	3.38	3.93	3.62	3.8	0.003	0.57	0.0	0.04	19.28	0.00	2.072	10.30	0.19	4.9	95.1	0.0	-0.08	0.82	0.84	1.60	3.8	0.004	0.60	0.0	0.04	19.73	0.00	1.989	7.48	2.34	5.1	94.9	0.0	0.31	0.36	0.83	0.86	1.50	27219	3246	9	102	3	0	0	logfile
✔	9DLi	46979	2025-05-28	2024-09-11	2.7	2.92	2.74	3.0	0.013	1.66	0.0	0.09	13.12	0.01	2.469	0.00	0.36	4.2	95.8	0.0	-0.47	0.55	0.69	4.29	3.0	0.005	0.79	2.0	0.04	16.30	0.01	2.011	6.37	1.67	2.1	97.9	0.0	1.51	1.04	0.51	0.76	3.18	30300	1848	4	0	0	0	15064	logfile
✔	9GRC	51520	2025-05-13	2024-09-11	3.5	4.03	3.54	15.0	0.002	0.66	0.0	0.04	13.80	0.00	2.197	7.46	0.00	3.9	96.1	0.0	-1.19	0.41	0.06	0.59	9.1	0.003	0.79	0.0	0.04	16.17	0.00	2.406	14.76	1.34	6.5	93.5	0.0	-1.20	1.56	0.48	0.19	0.52	9717	1263	6	0	2	0	0	logfile
✔	9DLX	46992	2025-05-17	2024-09-11	2.91	3.64	—	3.2	0.005	0.87	0.0	0.06	13.63	0.01	2.096	1.07	0.00	3.8	96.1	0.1	-2.34	0.91	0.90	2.92	3.3	0.003	0.57	0.0	0.04	14.66	0.00	1.989	2.20	0.76	3.1	96.9	0.1	0.80	1.27	0.91	0.90	2.50	15551	1938	11	0	4	0	0	logfile
✔	9DLZ	46993	2025-05-17	2024-09-11	3.4	3.81	—	3.5	0.005	0.94	2.0	0.06	13.73	0.01	2.091	2.11	0.00	3.5	96.2	0.3	-2.70	0.91	0.89	2.57	3.4	0.002	0.55	0.0	0.04	14.66	0.00	2.055	3.64	0.77	2.9	96.9	0.1	0.97	0.95	0.92	0.89	1.86	15455	1927	11	0	4	0	0	logfile
✔	9DM0	46994	2025-05-15	2024-09-11	2.9	3.19	2.98	3.2	0.005	0.82	0.0	0.05	14.13	0.01	2.184	4.33	0.00	2.6	97.4	0.0	-1.17	0.65	0.75	3.00	3.2	0.004	0.66	0.0	0.04	15.85	0.00	2.541	8.51	2.10	2.7	97.3	0.0	-0.42	0.84	0.65	0.80	2.90	13642	1691	17	0	21	0	0	logfile
✔	9JHP	61489	2025-05-12	2024-09-10	3.35	2.39	3.49	2.1	0.003	0.68	0.0	0.04	14.73	0.01	2.204	10.68	0.00	4.0	96.0	0.0	-0.79	0.75	0.74	1.77	2.2	0.003	0.64	0.0	0.04	15.96	0.00	2.392	5.93	3.16	3.6	96.4	0.0	0.16	0.46	0.75	0.74	1.62	8683	1129	5	0	0	0	0	logfile
✔	9GQo	51510	2025-05-10	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.004	0.86	0.0	0.04	18.13	0.00	1.907	20.42	3.87	7.2	92.8	0.0	-0.95	1.41	0.82	0.82	0.04	6716	880	2	0	3	0	0	logfile
✔	9JHJ	61484	2025-05-11	2024-09-09	3.2	3.66	3.24	1.8	0.005	0.77	1.0	0.05	13.23	0.00	2.208	8.68	0.15	5.2	94.8	0.0	-0.60	0.89	0.88	2.66	1.5	0.003	0.61	0.0	0.04	14.22	0.00	2.507	7.05	1.50	4.8	95.2	0.0	0.24	0.89	0.89	0.89	2.38	7761	1105	6	0	1	0	0	logfile
✔	9JH1	61469	2025-05-09	2024-09-08	3.07	3.80	3.07	3.6	0.008	1.14	0.0	0.04	18.63	0.03	2.104	17.92	1.81	6.8	93.2	0.0	-0.19	0.60	0.78	1.21	3.6	0.003	0.79	0.0	0.04	17.71	0.00	2.573	11.24	2.71	5.4	94.6	0.0	2.99	1.15	0.60	0.79	1.57	4255	525	4	0	6	0	0	logfile
✔	9DK8	46946	2025-05-10	2024-09-08	3.3	3.83	3.42	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.207	9.10	0.00	6.4	93.6	0.0	-0.16	0.61	0.83	2.88	3.8	0.003	0.65	0.0	0.04	17.16	0.00	2.413	7.60	1.36	6.0	94.0	0.0	-0.02	0.43	0.61	0.83	2.14	6678	858	6	0	0	0	0	logfile
✔	9DJ8	46936	2025-05-16	2024-09-06	2.58	3.37	2.52	3.0	0.007	0.93	4.0	0.05	14.20	0.01	1.772	3.23	2.66	5.0	95.0	0.0	-1.93	0.66	0.85	5.05	3.0	0.003	0.52	0.0	0.04	14.68	0.00	2.205	1.48	0.48	4.5	95.5	0.0	0.07	0.51	0.66	0.88	4.23	14846	938	4	0	3	0	7277	logfile
✔	9DiL	46912	2025-05-13	2024-09-05	3.3	3.74	3.09	3.5	0.003	0.52	0.0	0.04	10.16	0.00	2.211	4.20	1.55	3.8	96.2	0.0	2.06	0.69	0.88	2.33	3.5	0.003	0.65	0.0	0.04	13.96	0.00	2.475	4.40	1.45	3.9	96.1	0.0	2.02	0.62	0.68	0.89	2.18	9783	1236	5	0	4	0	0	logfile
✔	9JFY	61444	2025-05-12	2024-09-05	3.21	3.44	3.23	3.5	0.003	0.46	0.0	0.04	15.56	0.00	2.208	5.40	0.00	1.9	98.1	0.0	1.40	0.58	0.66	1.94	3.5	0.005	0.65	0.0	0.04	16.67	0.00	2.252	6.03	4.25	2.2	97.8	0.0	0.84	0.73	0.64	0.78	2.32	8805	1133	7	0	1	0	0	logfile
✔	9GoA	51495	2025-05-29	2024-09-05	3.2	3.17	—	3.0	0.004	0.71	0.0	0.04	13.30	0.00	2.068	9.73	0.00	3.7	96.3	0.0	0.46	0.68	0.63	1.40	3.0	0.003	0.70	0.0	0.04	15.67	0.00	2.401	10.70	1.93	3.3	96.7	0.0	0.67	1.53	0.71	0.70	1.48	31628	4320	4	0	0	0	0	logfile
✔	9GoB	51496	2025-05-16	2024-09-05	3.2	4.17	3.23	3.5	0.008	0.73	0.0	0.05	13.18	0.01	1.947	4.96	0.00	3.9	96.1	0.0	-1.88	0.78	0.88	3.69	3.4	0.005	0.73	0.0	0.04	13.85	0.00	1.846	6.26	0.38	3.0	97.0	0.0	1.37	1.21	0.79	0.90	3.01	14814	1879	11	0	10	0	0	logfile
✔	9DiG	46905	2025-05-10	2024-09-05	3.22	3.49	3.26	4.0	0.007	0.76	0.0	0.03	25.27	0.00	2.126	19.21	0.00	0.0	0.0	0.0	—	0.83	0.83	—	4.0	0.008	0.76	0.0	0.04	24.78	0.00	2.122	18.88	0.00	0.0	0.0	0.0	—	0.95	0.83	0.85	—	4066	0	4	192	6	0	0	logfile
✔	9JFW	61442	2025-05-11	2024-09-05	3.13	2.26	3.17	2.1	0.003	0.62	1.0	0.04	16.74	0.00	2.156	10.42	0.48	4.8	95.2	0.0	-0.38	0.75	0.74	2.09	2.0	0.004	0.62	0.0	0.04	17.21	0.00	2.525	8.44	3.85	4.2	95.8	0.0	-0.16	1.10	0.77	0.76	1.69	7990	1037	5	0	0	0	0	logfile
✔	9JFZ	61445	2025-05-11	2024-09-05	2.9	2.20	2.96	2.1	0.003	0.69	1.0	0.04	16.11	0.01	2.203	8.85	0.57	4.4	95.6	0.0	0.21	0.75	0.75	2.61	2.0	0.004	0.64	0.0	0.04	16.97	0.00	2.411	4.70	2.99	3.6	96.4	0.0	0.29	0.43	0.78	0.77	2.82	8198	1049	5	0	0	0	0	logfile

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