Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9D85	46630	2025-05-11	2024-08-18	3.59	3.91	3.63	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.004	0.83	0.0	0.05	21.79	0.00	2.217	21.50	2.76	4.8	95.2	0.0	-1.67	1.65	0.75	0.60	0.96	7201	739	5	65	0	0	0	logfile
✔	9J78	61197	2025-05-27	2024-08-18	3.88	4.19	3.92	4.0	0.004	0.63	0.0	0.04	15.31	0.00	2.213	8.99	0.00	5.8	94.2	0.0	-0.93	0.81	0.80	1.21	4.0	0.003	0.66	0.0	0.04	16.94	0.00	2.521	12.32	1.48	5.5	94.5	0.0	0.37	1.35	0.82	0.83	1.02	25192	3124	12	0	17	0	0	logfile
✔	9J7C	61201	2025-05-12	2024-08-18	3.0	3.30	3.01	3.3	0.005	0.89	4.0	0.05	15.07	0.02	2.235	6.26	0.63	5.9	93.8	0.3	-4.19	0.62	0.85	2.34	3.3	0.003	0.65	0.0	0.04	14.82	0.00	2.568	3.82	1.79	4.5	95.5	0.0	-1.44	0.99	0.69	0.89	3.21	9252	1192	6	0	9	6	0	logfile
✔	9D84	46628	2025-05-19	2024-08-18	2.4	2.91	2.25	3.0	0.005	0.73	0.0	0.05	14.82	0.00	1.924	22.28	1.25	3.1	96.8	0.1	0.12	0.64	0.45	0.64	2.7	0.004	0.70	0.0	0.05	16.55	0.00	2.223	12.88	1.90	3.3	96.7	0.0	-0.22	1.53	0.86	0.92	4.31	19029	2529	6	0	0	0	0	logfile
✔	9J7B	61200	2025-05-21	2024-08-18	4.12	4.43	4.20	4.2	0.003	0.61	0.0	0.04	14.97	0.00	2.190	10.69	0.00	5.5	94.5	0.0	-1.08	0.80	0.69	—	4.2	0.003	0.66	0.0	0.04	14.77	0.00	2.343	15.66	0.00	6.4	93.6	0.0	0.01	1.10	0.83	0.78	—	20578	2679	11	0	21	0	0	logfile
✘	9J7A	61199	2025-05-13	2024-08-18	4.13	4.32	4.10	4.2	0.003	0.66	0.0	0.04	14.85	0.01	2.244	8.56	0.08	6.4	93.6	0.0	-0.81	0.74	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11036	1389	6	0	22	0	0	logfile
✔	9D70	46599	2025-05-20	2024-08-16	3.3	4.03	3.38	3.2	0.013	1.28	0.0	0.08	21.06	0.01	2.364	31.87	0.00	0.0	100.0	0.0	-4.81	0.90	0.82	1.84	3.1	0.093	3.88	253.0	0.25	27.94	0.02	1.445	110.04	29.93	48.2	51.6	0.2	-7.51	3.61	0.93	0.91	1.63	20880	1440	360	0	360	0	0	logfile
✔	9D7K	46607	2025-05-09	2024-08-16	3.0	2.55	3.03	2.9	0.002	0.55	0.0	0.04	17.29	0.00	2.308	9.53	1.60	3.1	96.9	0.0	0.63	0.65	0.67	2.01	2.2	0.004	0.90	0.0	0.05	18.28	0.01	2.507	17.82	3.19	4.5	95.5	0.0	0.35	1.35	0.66	0.72	2.38	2843	359	1	0	0	0	0	logfile
✔	9GH6	51348	2025-05-09	2024-08-15	3.0	2.41	3.20	2.2	0.014	0.91	0.0	0.06	13.76	0.00	2.201	8.31	1.12	4.0	96.0	0.0	0.22	0.51	0.67	3.38	2.2	0.003	0.69	0.0	0.05	15.43	0.00	2.230	11.39	4.47	6.1	93.9	0.0	-0.48	0.73	0.59	0.76	2.50	3159	200	2	0	7	0	1498	logfile
✔	9J66	61167	2025-05-09	2024-08-15	3.55	3.77	3.46	3.8	0.003	0.55	0.0	0.04	12.70	0.00	2.298	7.69	0.00	5.8	94.2	0.0	-2.15	0.55	0.72	2.49	3.8	0.003	0.57	0.0	0.04	14.74	0.00	2.556	6.65	3.05	5.4	94.6	0.0	-1.62	0.42	0.56	0.72	1.67	4044	559	4	0	0	0	0	logfile
✔	9GH4	51346	2025-05-10	2024-08-15	3.8	2.34	3.66	3.5	0.002	0.60	0.0	0.04	16.59	0.00	2.220	7.84	1.06	2.4	97.6	0.0	-2.02	0.69	0.70	1.25	2.2	0.004	0.70	0.0	0.05	17.48	0.00	2.501	13.59	4.94	6.7	93.3	0.0	-3.43	1.07	0.76	0.74	2.19	5454	750	3	0	0	0	0	logfile
✔	9GH5	51347	2025-05-13	2024-08-15	2.7	2.18	2.69	2.0	0.010	0.89	0.0	0.06	17.19	0.01	2.174	9.98	2.54	3.7	96.3	0.0	-1.47	0.70	0.78	3.86	1.9	0.005	0.72	0.0	0.05	17.36	0.00	2.431	7.27	5.62	4.4	95.6	0.0	-1.63	1.31	0.81	0.84	3.98	10383	1347	12	0	18	3	0	logfile
✔	9D6F	46596	2025-05-10	2024-08-15	4.24	4.50	4.13	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.004	0.75	0.0	0.04	13.98	0.00	2.541	8.52	0.00	10.1	89.9	0.0	-2.24	0.49	0.69	0.79	—	4672	610	5	0	0	0	0	logfile
✔	9D6A	46591	2025-05-09	2024-08-14	2.6	2.76	2.61	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.51	0.0	0.04	16.54	0.00	2.183	6.12	1.18	1.5	98.5	0.0	2.06	0.34	0.49	0.86	2.95	3105	407	3	0	4	9	0	logfile
✔	9D66	46586	2025-05-12	2024-08-14	2.98	3.18	2.93	3.2	0.004	0.68	0.0	0.04	13.81	0.00	2.055	3.35	0.00	1.8	98.2	0.0	-1.67	0.58	0.79	3.71	3.2	0.003	0.55	0.0	0.04	15.41	0.00	2.196	7.32	2.56	1.0	99.0	0.0	1.88	0.53	0.64	0.82	2.37	9306	1221	10	0	12	12	0	logfile
✔	9D61	46585	2025-05-10	2024-08-14	3.58	3.05	—	3.8	0.004	0.74	0.0	0.05	12.93	0.00	2.249	5.72	0.00	6.7	93.3	0.0	-1.57	0.67	0.63	0.77	3.8	0.003	0.79	0.0	0.04	16.34	0.00	2.506	13.57	2.62	5.9	94.1	0.0	-0.54	0.91	0.68	0.66	0.85	6895	903	5	0	1	0	0	logfile
✔	9D68	46589	2025-05-09	2024-08-14	2.58	2.77	2.59	2.8	0.003	0.55	0.0	0.04	16.08	0.00	2.112	3.30	0.28	1.0	99.0	0.0	1.51	0.51	0.87	3.43	2.8	0.003	0.52	0.0	0.04	16.71	0.00	2.137	6.30	1.98	1.0	99.0	0.0	1.99	0.88	0.49	0.86	2.90	3242	426	3	0	2	6	0	logfile
✔	9D67	46588	2025-05-12	2024-08-14	2.87	3.10	1.44	3.2	0.003	0.60	0.0	0.04	16.10	0.01	2.143	4.81	0.00	2.1	97.9	0.0	0.93	0.52	0.74	2.24	3.2	0.003	0.58	0.0	0.04	16.23	0.00	2.173	8.67	2.08	1.3	98.7	0.0	1.72	1.18	0.64	0.81	2.62	9297	1218	9	0	15	3	0	logfile
✔	9D69	46590	2025-05-09	2024-08-14	2.99	3.21	3.06	3.2	0.003	0.55	0.0	0.04	15.99	0.01	2.096	3.87	0.00	1.7	98.3	0.0	0.78	0.46	0.84	3.65	3.2	0.003	0.60	0.0	0.04	16.70	0.00	2.274	6.96	1.74	2.0	98.0	0.0	2.13	0.94	0.43	0.82	2.51	3143	413	3	0	4	0	0	logfile
✔	9J5W	61155	2025-05-09	2024-08-13	3.2	3.54	3.38	3.6	0.008	0.62	0.0	0.04	13.10	0.00	2.114	6.69	0.00	1.2	98.6	0.2	1.27	0.54	0.76	1.61	3.6	0.002	0.58	0.0	0.04	14.96	0.00	2.332	4.29	1.69	0.8	99.0	0.2	1.76	0.41	0.53	0.78	1.51	3933	515	2	0	1	0	0	logfile

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