Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9ERD	19912	2025-05-10	2024-03-22	3.72	3.87	3.65	3.9	0.005	0.71	0.0	0.04	15.66	0.00	1.752	8.87	0.28	7.0	93.0	0.0	-1.42	0.70	0.73	1.83	3.9	0.003	0.70	1.0	0.04	16.46	0.00	1.904	7.51	1.65	4.5	95.5	0.0	0.00	0.44	0.70	0.72	1.35	6569	813	2	0	4	0	0	logfile
✔	9ERF	19914	2025-05-16	2024-03-22	2.64	2.70	2.55	2.8	0.004	0.62	2.0	0.04	16.90	0.01	1.928	3.02	0.74	2.5	97.5	0.0	1.03	0.71	0.87	4.01	2.8	0.003	0.55	0.0	0.04	17.60	0.00	1.976	4.21	1.56	2.7	97.3	0.0	1.15	0.38	0.72	0.89	3.71	14459	1654	7	52	8	0	0	logfile
✔	8YRM	39544	2025-05-26	2024-03-21	2.36	3.02	2.48	2.8	0.008	1.04	0.0	0.07	15.56	0.01	2.069	3.93	0.88	5.5	94.3	0.2	0.06	0.87	0.94	5.10	2.8	0.003	0.50	0.0	0.04	15.97	0.00	2.217	4.86	1.07	5.3	94.7	0.0	0.67	0.27	0.80	0.90	4.47	27853	3577	14	0	14	0	0	logfile
✔	9B4o	44187	2025-05-10	2024-03-21	3.5	3.73	2.59	3.8	0.006	0.77	0.0	0.05	11.06	0.00	2.333	4.78	0.00	12.0	88.0	0.0	-4.02	0.50	0.84	3.15	3.7	0.004	0.73	0.0	0.05	16.06	0.00	2.586	8.30	1.49	8.3	91.7	0.0	-3.14	1.30	0.48	0.82	2.54	5870	770	10	0	0	0	0	logfile
✔	9B4N	44186	2025-05-10	2024-03-21	3.5	3.72	2.58	3.8	0.006	0.59	0.0	0.05	11.99	0.00	2.305	9.64	4.48	10.7	89.3	0.0	-2.81	0.44	0.82	3.53	3.8	0.004	0.74	0.0	0.05	15.39	0.00	2.564	9.72	3.88	8.3	91.7	0.0	-2.51	0.54	0.42	0.79	3.14	5870	770	10	0	0	0	0	logfile
✔	8YRo	39546	2025-05-26	2024-03-21	3.27	3.54	3.31	3.5	0.006	1.02	2.0	0.06	15.19	0.01	1.176	12.50	0.58	5.9	93.7	0.4	-3.94	0.65	0.63	1.54	3.5	0.004	0.77	1.0	0.05	16.35	0.00	2.064	11.26	2.49	5.4	94.6	0.0	-1.71	1.34	0.70	0.72	1.32	27775	3589	9	0	0	0	0	logfile
✔	8YRG	39542	2025-05-11	2024-03-21	3.14	2.21	3.09	2.0	0.007	0.69	0.0	0.05	12.79	0.00	2.093	9.25	0.00	7.4	92.6	0.0	-0.87	0.74	0.75	3.71	1.9	0.003	0.62	0.0	0.04	14.93	0.00	2.542	6.27	3.31	4.1	95.9	0.0	0.57	0.94	0.74	0.76	2.92	7977	1079	6	0	1	0	0	logfile
✔	8YRP	39547	2025-05-25	2024-03-21	3.64	4.24	3.77	3.9	0.010	1.42	4.0	0.08	15.38	0.01	1.316	13.78	1.44	7.2	92.3	0.5	-2.67	0.73	0.59	0.46	3.9	0.003	0.73	0.0	0.05	16.33	0.00	2.425	14.66	2.56	5.9	94.1	0.0	-1.77	1.38	0.74	0.61	0.31	25462	3266	5	0	0	0	0	logfile
✔	9B4Y	44191	2025-05-10	2024-03-21	3.74	7.34	3.86	6.0	0.002	0.52	0.0	0.04	12.31	0.00	2.199	7.23	4.81	2.2	97.8	0.0	0.57	0.89	0.77	-0.03	6.0	0.004	1.05	0.0	0.05	14.57	0.00	2.310	21.56	2.03	3.6	96.4	0.0	0.33	0.86	0.90	0.83	-0.79	7178	919	2	0	0	0	0	logfile
✔	8YRJ	39543	2025-05-09	2024-03-21	3.87	4.13	3.93	4.1	0.003	0.57	0.0	0.04	19.29	0.00	2.240	4.49	0.00	3.6	96.0	0.4	2.39	0.49	0.67	1.42	4.1	0.004	0.92	0.0	0.05	16.89	0.00	2.496	15.47	4.24	4.9	94.4	0.7	0.88	1.64	0.53	0.74	1.31	3748	454	7	0	9	0	0	logfile
✔	8YQV	39507	2025-05-27	2024-03-20	2.67	2.93	2.83	3.0	0.006	0.69	0.0	0.05	14.30	0.01	1.905	9.21	0.36	3.9	96.1	0.0	-1.25	0.59	0.84	4.08	3.0	0.003	0.55	0.0	0.04	15.49	0.00	1.997	6.03	1.45	3.2	96.8	0.0	0.38	0.34	0.58	0.84	3.39	29637	3717	12	0	5	0	0	logfile
✔	9B4M	44185	2025-05-10	2024-03-20	3.1	3.49	2.42	3.4	0.006	0.60	0.0	0.05	11.90	0.00	2.311	4.95	0.00	9.3	90.7	0.0	-3.19	0.47	0.86	4.78	3.5	0.005	0.74	0.0	0.05	16.84	0.01	2.553	3.27	4.18	9.3	90.7	0.0	-2.89	0.56	0.42	0.81	3.35	5870	770	10	0	0	0	0	logfile
✔	9B4J	44182	2025-05-09	2024-03-20	3.5	3.72	2.36	3.9	0.007	0.99	0.0	2.22	17.17	0.00	2.202	16.47	0.00	0.0	0.0	0.0	—	0.59	0.82	—	3.7	0.094	5.43	308.0	0.27	26.26	0.01	1.874	71.37	0.00	0.0	0.0	0.0	—	2.18	0.63	0.89	—	3600	0	60	0	420	0	0	logfile
✔	9B3U	44156	2025-05-20	2024-03-20	2.4	2.75	2.47	2.7	0.012	1.73	0.0	0.09	13.69	0.01	2.455	3.61	0.19	2.0	98.0	0.0	-0.45	0.67	0.85	4.80	2.7	0.002	0.50	0.0	0.04	16.00	0.00	2.432	3.79	1.04	0.9	99.1	0.0	2.45	0.59	0.64	0.85	4.09	19842	2427	8	0	8	0	0	logfile
✔	8YQX	39509	2025-05-10	2024-03-20	2.97	3.17	3.00	3.2	0.003	0.52	0.0	0.04	16.27	0.00	2.198	8.03	0.72	3.7	96.3	0.0	-0.18	0.56	0.85	2.68	3.2	0.005	0.60	0.0	0.05	16.99	0.00	2.451	6.91	3.33	4.2	95.8	0.0	-0.15	0.31	0.55	0.86	2.39	6167	766	3	0	0	0	0	logfile
✔	9B4L	44184	2025-05-12	2024-03-20	3.1	3.48	2.66	3.5	0.039	0.95	0.0	0.06	15.50	0.01	2.292	15.36	7.46	10.7	89.3	0.0	-2.54	0.46	0.79	4.63	3.4	0.007	0.80	0.0	0.05	16.88	0.00	2.444	9.22	3.98	9.0	91.0	0.0	-2.50	1.15	0.46	0.84	4.20	8652	924	42	0	174	0	0	logfile
✔	8YR0	39532	2025-05-22	2024-03-20	3.06	3.79	3.09	3.5	0.004	0.67	0.0	0.04	18.96	0.01	2.200	5.40	0.13	2.2	97.8	0.0	0.91	0.78	0.84	1.02	3.5	0.002	0.54	0.0	0.04	16.18	0.00	2.459	4.31	2.56	2.2	97.8	0.0	1.89	0.58	0.80	0.89	1.28	23128	3084	6	0	6	0	0	logfile
✔	9B4K	44183	2025-05-09	2024-03-20	3.7	3.65	3.07	4.1	0.006	0.87	0.0	2.22	28.57	0.00	2.163	15.47	0.00	0.0	0.0	0.0	—	0.51	0.79	—	4.1	0.085	5.10	225.0	0.27	33.41	0.03	1.838	64.08	0.00	0.0	0.0	0.0	—	0.84	0.57	0.87	—	3380	0	52	0	364	0	0	logfile
✔	8YQZ	39511	2025-05-27	2024-03-20	2.78	2.82	2.70	5.9	0.009	0.79	0.0	0.05	16.64	0.01	1.986	7.76	2.52	3.6	96.4	0.0	-1.05	0.09	-0.06	0.02	2.8	0.003	0.81	0.0	0.05	17.60	0.01	2.127	11.79	1.33	4.8	95.2	0.0	-1.07	1.60	0.48	0.54	0.97	29943	3717	14	15	5	0	0	logfile
✔	9EQ2	19894	2025-05-16	2024-03-20	3.68	4.41	3.57	3.9	0.007	1.03	0.0	0.05	17.34	0.01	2.291	2.79	0.25	2.8	97.2	0.0	-0.26	0.77	0.77	1.84	3.9	0.003	0.65	0.0	0.04	17.27	0.00	2.301	7.57	1.75	2.1	97.9	0.0	1.78	2.13	0.82	0.87	1.57	14615	1876	10	0	3	0	0	logfile

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