Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QYJ	18755	2024-06-29	2023-10-26	2.73	3.16	2.80	3.0	0.002	0.44	0.0	0.04	13.65	0.00	2.235	2.65	0.00	2.0	98.0	0.0	1.76	0.79	0.88	3.08	3.0	0.004	0.54	0.0	0.04	15.86	0.00	2.154	2.68	1.52	2.5	97.5	0.0	1.42	0.26	0.78	0.89	2.85	19402	2498	13	0	3	0	0	logfile
✘	8QYS	18761	2024-06-25	2023-10-26	3.89	4.28	3.89	4.1	0.003	0.57	2.0	0.04	14.29	0.00	2.222	9.04	0.00	10.1	89.9	0.0	-1.10	0.85	0.85	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57862	7588	34	0	0	0	0	logfile
✔	8QZ8	18772	2024-06-30	2023-10-26	3.13	3.36	3.18	3.4	0.003	0.46	0.0	0.04	18.09	0.00	1.861	3.62	0.09	3.3	96.5	0.1	1.13	0.67	0.84	3.19	3.4	0.004	0.77	1.0	0.04	17.70	0.00	1.865	4.24	1.20	4.2	95.8	0.1	0.94	1.99	0.71	0.86	3.26	22629	1356	8	42	5	0	11077	logfile
✔	8URB	42488	2024-06-30	2023-10-25	3.4	3.75	3.45	3.8	0.002	0.52	0.0	0.04	15.02	0.00	2.269	2.86	0.17	2.2	97.8	0.0	-0.61	0.73	0.82	3.32	3.8	0.004	0.53	0.0	0.04	15.83	0.00	2.140	3.79	2.35	4.1	95.9	0.0	0.06	1.12	0.72	0.82	2.35	22714	1359	7	41	2	0	11060	logfile
✔	8UR6	42484	2024-06-25	2023-10-25	3.03	3.72	3.10	3.5	0.007	0.76	0.0	0.05	13.54	0.01	2.219	4.52	0.00	1.9	98.1	0.0	-0.07	0.83	0.84	2.50	3.5	0.003	0.47	0.0	0.04	14.45	0.00	2.159	8.44	0.60	1.7	98.3	0.0	1.16	1.59	0.83	0.85	2.26	7540	930	2	0	0	0	0	logfile
✔	8UR5	42482	2024-06-24	2023-10-25	3.7	3.90	2.45	4.0	0.011	1.45	0.0	0.09	9.30	0.01	2.510	6.45	1.71	4.3	95.2	0.4	-0.71	0.66	0.72	3.62	4.0	0.003	0.68	0.0	0.04	12.58	0.00	2.359	6.13	1.42	3.3	96.2	0.4	-0.12	1.63	0.68	0.78	3.59	4989	696	6	0	12	0	0	logfile
✔	8UR3	42480	2024-06-26	2023-10-25	2.61	3.41	2.64	3.1	0.003	0.51	0.0	0.04	13.47	0.00	2.253	4.15	0.00	2.7	97.3	0.0	-0.63	0.86	0.85	3.65	3.1	0.003	0.49	0.0	0.04	14.96	0.00	2.150	8.09	0.58	2.9	97.1	0.0	1.00	1.17	0.87	0.86	3.24	9376	1158	2	0	0	0	0	logfile
✔	8WW2	37881	2024-06-25	2023-10-24	2.79	3.00	2.84	3.1	0.004	0.71	0.0	0.05	13.76	0.00	1.809	4.15	0.00	3.5	96.5	0.0	0.09	0.66	0.80	2.96	3.1	0.003	0.54	0.0	0.04	15.84	0.00	2.291	2.86	1.36	3.0	97.0	0.0	1.21	0.34	0.64	0.81	2.45	7792	1020	6	0	3	2	0	logfile
✔	8QXo	18734	2024-06-28	2023-10-24	3.43	3.56	3.52	3.5	0.003	0.63	0.0	0.04	16.43	0.01	1.759	4.94	0.13	3.0	96.9	0.1	0.60	0.64	0.70	1.63	3.5	0.003	0.57	0.0	0.04	17.64	0.00	1.885	5.76	2.76	3.5	96.4	0.1	0.15	0.88	0.77	0.82	2.10	14291	1747	8	0	14	0	0	logfile
✔	8QXK	18730	2024-06-28	2023-10-24	2.66	2.75	2.70	2.7	0.003	0.74	0.0	0.05	17.51	0.00	1.965	3.56	0.00	2.4	97.6	0.0	-0.20	0.76	0.81	4.69	2.7	0.002	0.55	0.0	0.04	17.69	0.00	1.925	4.29	1.98	1.6	98.3	0.1	0.64	1.14	0.75	0.84	3.96	15323	1832	8	0	28	0	0	logfile
✔	8QXN	18733	2024-06-28	2023-10-24	2.98	3.14	3.09	3.1	0.003	0.61	0.0	0.05	17.34	0.00	1.867	4.09	0.07	3.9	96.1	0.0	0.87	0.68	0.73	1.57	3.1	0.005	0.69	0.0	0.05	18.61	0.00	1.847	6.66	2.35	4.6	95.4	0.1	-0.12	1.44	0.76	0.83	2.57	14461	1760	8	0	22	0	0	logfile
✔	8QX9	18715	2024-06-24	2023-10-24	3.76	3.94	3.62	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.86	0.0	0.04	20.21	0.00	2.230	20.41	2.87	3.7	96.3	0.0	-4.87	2.16	0.49	0.76	5.02	3696	540	12	0	0	0	0	logfile
✔	8QXM	18732	2024-06-28	2023-10-24	2.94	3.04	3.00	3.0	0.003	0.63	0.0	0.04	17.60	0.01	1.812	2.88	0.00	4.1	95.9	0.0	0.06	0.77	0.83	2.81	3.0	0.003	0.59	0.0	0.04	17.72	0.00	1.850	5.18	1.92	3.6	96.4	0.0	0.24	1.15	0.77	0.85	2.69	14658	1784	8	0	24	0	0	logfile
✔	8QXB	18717	2024-06-24	2023-10-24	3.86	3.89	3.45	4.3	0.014	2.28	0.0	0.11	18.19	0.01	2.508	1.77	0.00	2.3	97.7	0.0	-3.90	0.53	0.71	2.65	4.2	0.004	1.26	1.0	0.04	18.38	0.00	2.084	19.76	4.41	4.1	95.9	0.0	-5.05	3.44	0.53	0.77	2.41	5544	810	18	0	0	0	0	logfile
✔	8QXA	18716	2024-06-24	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.004	0.84	0.0	0.04	14.57	0.00	2.342	19.02	0.00	9.1	90.9	0.0	-4.56	1.51	0.49	0.75	—	3696	540	12	0	0	0	0	logfile
✔	8UQ6	42462	2024-06-27	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	20.0	0.003	0.83	0.0	0.05	16.42	0.01	1.910	10.57	1.94	19.2	80.4	0.4	-3.72	2.32	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	8UPT	42455	2024-06-24	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.005	0.73	0.0	0.04	27.91	0.01	2.113	22.27	0.00	0.0	0.0	0.0	—	0.95	0.28	0.87	—	1518	0	1	71	0	0	0	logfile
✔	8UPF	42446	2024-06-30	2023-10-22	3.2	3.76	3.25	3.6	0.007	0.65	0.0	0.04	26.92	0.00	1.329	10.34	0.47	4.3	95.7	0.0	-2.24	0.79	0.83	2.25	3.6	0.003	0.58	0.0	0.03	26.72	0.00	2.147	9.33	1.16	3.0	97.0	0.0	1.82	0.45	0.77	0.82	1.38	14012	1006	13	293	2	0	0	logfile
✔	8WUW	37862	2024-06-27	2023-10-21	2.6	3.26	2.77	3.0	0.002	0.58	0.0	0.04	17.05	0.00	2.007	7.82	1.18	2.5	97.5	0.0	1.36	0.83	0.83	2.94	3.0	0.003	0.61	0.0	0.04	16.46	0.00	1.971	8.69	2.02	2.7	97.3	0.0	1.18	0.40	0.84	0.90	2.42	64841	8540	42	0	35	0	0	logfile
✔	8WUU	37860	2024-06-28	2023-10-21	3.2	4.23	3.27	3.3	0.006	0.58	0.0	0.04	20.53	0.00	2.145	6.59	0.00	2.5	97.5	0.0	1.21	0.81	0.61	2.37	3.3	0.003	0.48	0.0	0.03	20.19	0.00	2.202	9.17	1.27	1.8	98.2	0.0	1.39	0.66	0.91	0.88	2.04	14563	1313	5	181	0	0	0	logfile

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