Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R2i	18848	2024-06-29	2023-11-06	2.9	3.54	2.94	3.3	0.021	1.62	0.0	0.09	21.20	0.01	2.210	12.01	0.00	3.3	96.7	0.0	1.58	0.75	0.83	3.31	3.3	0.003	0.88	0.0	0.04	16.33	0.00	1.983	9.82	1.16	2.8	97.2	0.0	1.89	0.36	0.73	0.89	3.28	18054	1923	21	0	58	5	0	logfile
✔	8X1C	37990	2024-06-25	2023-11-06	3.2	3.25	3.24	3.2	0.005	0.89	2.0	0.08	18.43	0.01	1.051	10.94	5.29	4.4	95.2	0.4	-2.42	0.67	0.54	0.97	3.2	0.003	0.66	0.0	0.04	19.79	0.00	2.129	11.55	2.28	5.6	94.4	0.1	-0.28	1.64	0.80	0.83	1.35	56519	6347	35	294	10	0	0	logfile
✔	8X16	37985	2024-06-25	2023-11-06	3.29	3.58	3.36	3.7	0.005	0.53	0.0	0.04	8.10	0.00	2.203	8.34	0.32	2.0	97.9	0.1	-1.18	0.56	0.60	1.26	3.6	0.003	0.70	0.0	0.04	14.83	0.00	2.116	13.17	2.77	3.4	96.6	0.0	0.16	1.17	0.63	0.79	1.76	8751	1126	6	0	1	0	0	logfile
✔	8X15	37984	2024-06-25	2023-11-06	3.2	3.28	3.28	3.0	0.004	0.69	0.0	0.05	17.10	0.01	1.169	13.08	4.96	4.6	95.2	0.2	-2.12	0.60	0.44	0.83	3.0	0.007	0.78	0.0	0.05	19.03	0.01	2.098	13.98	2.58	5.7	94.2	0.0	-0.10	0.98	0.76	0.82	1.33	55488	6279	33	274	8	0	0	logfile
✔	8X19	37988	2024-06-25	2023-11-06	3.2	3.02	3.29	3.2	0.005	0.83	0.0	0.05	20.52	0.01	1.500	20.98	7.61	6.6	92.9	0.5	-2.03	0.59	0.48	1.30	3.1	0.004	0.75	1.0	0.04	20.68	0.00	1.826	13.89	2.85	5.6	94.2	0.2	-0.42	2.12	0.73	0.80	1.27	56704	6372	34	294	11	0	0	logfile
✔	8UW3	42637	2024-06-27	2023-11-06	3.2	3.11	3.18	3.2	0.006	0.64	0.0	0.04	17.22	0.00	1.850	8.61	2.51	5.4	94.5	0.1	0.74	0.79	0.79	2.52	3.2	0.003	0.58	0.0	0.04	18.61	0.00	2.158	13.32	2.59	5.3	94.6	0.1	0.82	0.99	0.82	0.84	2.34	12005	1265	4	73	1	0	0	logfile
✔	8X17	37986	2024-06-25	2023-11-06	3.19	3.42	3.20	3.4	0.005	0.56	0.0	0.04	12.62	0.00	2.053	3.79	0.32	1.6	98.4	0.0	-0.96	0.62	0.78	2.23	3.4	0.005	0.64	0.0	0.05	15.43	0.00	2.167	8.22	2.45	2.9	97.1	0.0	0.76	1.06	0.62	0.85	2.45	8753	1127	6	0	1	0	0	logfile
✔	8UWL	42676	2024-06-25	2023-11-06	2.8	2.30	—	2.9	0.013	1.69	10.0	0.12	12.38	0.01	2.079	5.47	1.43	3.0	97.0	0.0	1.81	0.83	0.83	4.24	2.9	0.003	0.61	0.0	0.04	16.19	0.00	2.291	2.76	2.85	2.9	97.1	0.0	0.82	1.04	0.83	0.86	3.59	8626	1123	6	0	1	0	0	logfile
✘	8R2H	18842	2024-06-27	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11484	1394	4	0	4	0	0	logfile
✔	8UVU	42629	2024-06-27	2023-11-04	3.0	3.23	2.99	3.2	0.003	0.60	0.0	0.04	14.70	0.00	2.246	8.69	0.00	4.3	95.7	0.0	1.70	0.68	0.83	2.96	3.2	0.004	0.65	0.0	0.04	16.24	0.00	2.210	9.67	3.18	5.1	94.9	0.0	1.88	0.26	0.64	0.83	2.95	11976	1516	8	0	8	0	0	logfile
✔	8UVT	42628	2024-06-27	2023-11-04	2.9	3.16	2.88	3.1	0.003	0.47	0.0	0.04	15.28	0.00	2.233	8.27	0.00	3.7	96.3	0.0	2.31	0.67	0.83	2.02	3.1	0.003	0.52	0.0	0.04	17.33	0.00	2.233	8.79	2.07	3.9	96.1	0.0	3.47	0.35	0.63	0.82	1.80	12104	1544	4	0	0	0	0	logfile
✔	8X01	37964	2024-06-28	2023-11-02	3.01	3.35	—	3.3	0.005	0.75	1.0	0.05	15.84	0.01	2.259	11.44	0.49	1.8	98.2	0.0	1.10	0.71	0.84	2.54	3.3	0.003	0.70	0.0	0.04	16.48	0.00	2.164	11.24	3.06	2.1	97.9	0.0	1.28	0.67	0.68	0.83	2.75	12742	1608	6	0	2	0	0	logfile
✔	8UUX	42600	2024-06-27	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.004	0.89	1.0	0.05	16.25	0.01	2.116	3.89	2.60	6.1	93.8	0.1	-1.17	0.20	0.42	0.85	3.64	12084	1532	9	0	3	310	0	logfile
✔	8UV3	42604	2024-06-27	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.003	0.70	0.0	0.05	16.05	0.01	1.919	4.48	2.36	5.6	94.4	0.0	-1.63	0.35	0.37	0.76	3.31	12069	1534	9	0	3	276	0	logfile
✔	8WZX	37963	2024-06-25	2023-11-02	2.88	2.79	2.64	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.004	0.73	0.0	0.04	15.13	0.00	2.387	8.06	1.71	3.5	96.5	0.0	-4.16	0.93	0.53	0.89	5.59	7300	1020	20	0	0	0	0	logfile
✔	8UUZ	42602	2024-06-24	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.003	0.91	0.0	0.05	16.74	0.01	2.249	38.64	6.52	8.0	92.0	0.0	-1.98	1.31	0.75	0.58	0.64	2258	300	2	0	0	0	0	logfile
✔	8R1J	18818	2024-06-28	2023-11-02	3.2	3.58	—	3.5	0.003	0.54	1.0	0.04	14.46	0.00	1.901	8.01	0.00	7.1	92.7	0.2	-1.29	0.72	0.79	2.68	3.5	0.004	0.55	0.0	0.04	15.63	0.00	1.919	8.85	0.72	7.3	92.5	0.2	-0.79	0.34	0.72	0.81	2.70	67775	4237	7	0	0	0	33874	logfile
✔	8WZB	37949	2024-06-29	2023-11-01	3.28	2.56	—	3.1	0.005	1.12	0.0	0.05	17.82	0.01	2.290	5.87	0.74	4.2	95.7	0.0	-2.34	0.79	0.76	1.83	3.0	0.005	0.76	0.0	0.05	17.95	0.01	2.105	15.72	4.59	4.8	95.1	0.1	-0.72	1.02	0.81	0.81	2.24	17594	2181	11	0	0	0	0	logfile
✔	8WZ2	37944	2024-06-26	2023-11-01	2.73	3.66	2.90	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.4	0.008	1.24	2.0	0.05	15.41	0.00	1.950	15.26	3.10	2.3	97.7	0.0	0.63	4.12	0.70	0.84	2.77	9355	1202	6	0	0	0	0	logfile
✔	8R1F	18809	2024-06-28	2023-11-01	3.67	3.92	3.69	3.9	0.008	0.98	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	3.9	0.003	0.59	0.0	0.04	14.98	0.00	1.854	8.66	1.70	3.5	96.5	0.0	0.78	1.64	0.70	0.69	1.27	16629	1025	5	0	3	0	8263	logfile

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