Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UMR	42382	2024-06-29	2023-10-18	4.42	5.02	4.78	4.6	0.004	0.82	0.0	0.05	12.52	0.01	2.052	27.72	0.00	2.7	97.3	0.0	-0.03	0.83	0.77	—	4.6	0.003	0.77	0.0	0.04	13.35	0.01	2.027	24.85	0.00	4.0	96.0	0.0	-0.02	1.13	0.84	0.82	—	18615	2364	21	0	0	0	0	logfile
✔	8UMP	42381	2024-06-30	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.003	0.49	0.0	0.04	18.83	0.00	2.243	8.01	2.66	1.0	99.0	0.0	3.61	0.37	0.69	0.88	3.87	21432	2724	24	0	0	0	0	logfile
✔	8QVW	18674	2024-06-24	2023-10-18	3.0	3.25	3.07	3.2	0.003	0.60	0.0	0.04	18.02	0.00	2.155	14.69	0.23	4.3	95.7	0.0	1.25	0.75	0.76	1.70	3.2	0.003	0.69	0.0	0.04	18.59	0.00	2.180	13.80	3.00	5.0	95.0	0.0	1.13	1.22	0.73	0.76	2.13	3918	492	2	0	0	0	0	logfile
✔	8WTD	37832	2024-06-25	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.90	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.004	0.58	0.0	0.04	17.94	0.00	2.133	8.40	2.31	5.2	94.7	0.1	0.42	0.97	0.60	0.85	2.30	6456	790	3	0	4	0	0	logfile
✔	8UMD	42376	2024-06-25	2023-10-17	3.6	4.61	3.60	3.7	0.003	0.72	0.0	0.04	16.78	0.01	2.098	13.27	0.50	4.9	94.8	0.3	0.54	0.50	0.80	0.85	3.7	0.003	0.76	0.0	0.04	17.13	0.00	2.101	16.96	3.26	4.9	94.8	0.3	0.75	1.76	0.51	0.85	0.71	7201	911	6	0	0	0	0	logfile
✔	8WSS	37823	2024-06-25	2023-10-17	3.01	2.86	2.95	3.1	0.002	0.46	0.0	0.04	9.95	0.00	2.082	6.49	0.43	2.3	97.7	0.0	1.40	0.71	0.83	2.49	3.1	0.003	0.58	0.0	0.04	14.28	0.00	2.148	9.36	2.45	3.4	96.4	0.2	0.83	0.65	0.72	0.87	2.89	8797	1143	6	0	0	0	0	logfile
✔	8UMC	42375	2024-06-25	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	96.9	0.1	-0.80	0.82	0.81	3.65	1.8	0.004	0.63	0.0	0.04	18.06	0.01	2.121	12.29	3.75	2.5	97.5	0.0	0.13	0.38	0.82	0.81	3.23	7198	890	6	0	2	0	0	logfile
✔	8WST	37824	2024-06-25	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.3	0.003	0.60	0.0	0.04	14.84	0.00	2.157	6.61	2.55	4.1	95.8	0.1	1.30	1.45	0.65	0.81	3.79	8286	1055	6	0	0	0	0	logfile
✔	8WRL	37779	2024-06-25	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.51	0.0	0.04	17.32	0.00	2.222	8.85	4.18	3.7	96.3	0.0	0.43	0.34	0.52	0.77	1.34	6472	790	4	0	5	0	0	logfile
✘	8QU9	18658	2024-06-30	2023-10-15	2.88	2.61	2.88	2.8	0.003	0.56	0.0	0.03	17.55	0.00	0.000	10.00	0.00	0.0	100.0	0.0	-2.00	0.74	0.87	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72756	8836	141	0	94	47	0	logfile
✔	8WRH	37776	2024-06-25	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.52	0.0	0.04	17.71	0.00	2.098	7.68	1.30	5.0	95.0	0.0	0.95	0.88	0.59	0.82	1.94	6459	790	3	0	4	0	0	logfile
✔	8WQR	37752	2024-06-26	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.004	0.69	0.0	0.05	14.11	0.00	2.144	15.84	2.60	8.4	91.4	0.1	-2.82	0.45	0.82	0.69	1.46	9681	1415	2	0	0	0	0	logfile
✔	8WQW	37756	2024-06-29	2023-10-12	3.27	2.51	3.28	1.9	0.005	0.70	0.0	0.05	13.42	0.01	2.125	9.31	0.10	5.2	94.8	0.0	-0.92	0.71	0.67	2.47	1.8	0.003	0.66	0.0	0.05	15.34	0.00	2.121	10.33	3.04	5.6	94.4	0.0	-0.85	1.58	0.74	0.71	1.89	8972	1174	8	0	5	0	0	logfile
✔	8QTD	18649	2024-06-24	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.7	0.004	0.61	0.0	0.04	13.98	0.00	2.133	11.18	3.51	5.0	95.0	0.0	-0.29	0.92	0.56	0.80	2.68	3219	413	3	0	0	0	0	logfile
✔	8QSQ	18639	2024-06-25	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.003	0.68	0.0	0.04	13.98	0.00	2.120	20.61	2.30	3.8	96.2	0.0	0.46	1.83	0.64	0.73	0.97	6512	791	3	0	6	0	0	logfile
✔	8WQi	37746	2024-06-24	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.004	0.67	0.0	0.04	16.80	0.00	2.077	14.72	2.37	10.5	89.5	0.0	-0.75	0.52	0.66	0.82	0.91	5074	644	2	0	0	0	0	logfile
✔	8WQD	37740	2024-06-24	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.004	1.08	1.0	0.05	16.68	0.00	2.237	11.99	2.55	7.1	92.9	0.0	0.58	0.30	0.67	0.83	1.88	5046	641	2	0	0	0	0	logfile
✔	8Ui7	42287	2024-06-30	2023-10-10	4.2	4.65	4.37	4.2	0.004	0.97	0.0	0.05	14.14	0.01	1.992	10.65	0.04	3.4	96.6	0.0	-1.37	0.85	0.77	—	4.2	0.004	0.70	0.0	0.04	14.14	0.00	1.803	21.00	0.00	3.7	96.3	0.0	0.01	0.96	0.86	0.78	—	21831	2760	13	0	8	0	0	logfile
✔	8QSN	18637	2024-06-24	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.87	0.0	0.04	15.50	0.00	2.062	16.31	2.68	3.5	96.5	0.0	1.78	1.45	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	8Ui9	42289	2024-06-30	2023-10-10	3.5	3.72	3.53	3.6	0.005	0.88	0.0	0.05	17.19	0.01	1.992	8.23	0.78	3.2	96.8	0.0	-1.22	0.76	0.74	1.02	3.6	0.003	0.64	0.0	0.04	17.62	0.00	2.008	14.25	3.00	3.2	96.8	0.0	0.16	0.50	0.76	0.73	1.02	21836	2760	13	0	9	0	0	logfile

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