Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DVA	47194	2025-06-16	2024-10-07	3.1	3.30	3.09	3.3	0.003	0.51	0.0	0.04	14.23	0.00	2.077	4.00	0.00	1.2	98.8	0.0	0.25	0.62	0.81	3.20	3.3	0.002	0.56	0.0	0.04	15.82	0.00	2.197	3.92	1.25	1.6	98.4	0.0	1.04	1.10	0.70	0.86	2.43	18529	2354	13	0	10	0	0	logfile
✔	9DVF	47202	2025-06-22	2024-10-07	3.38	3.55	3.38	3.5	0.004	0.64	0.0	0.04	15.04	0.01	2.333	2.66	0.46	0.7	99.3	0.0	-1.25	0.68	0.80	1.42	3.5	0.004	0.61	0.0	0.04	15.90	0.00	2.615	3.27	1.18	1.5	98.5	0.0	0.41	1.15	0.68	0.80	1.16	25968	3492	12	0	0	0	0	logfile
✔	9JUB	61826	2025-06-05	2024-10-07	3.1	3.29	3.10	3.3	0.022	1.26	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	3.3	0.004	0.72	0.0	0.05	13.92	0.00	2.506	6.86	1.81	5.6	94.4	0.0	-1.14	0.58	0.62	0.75	2.89	6479	829	5	0	5	0	0	logfile
✔	9GZP	51730	2025-06-04	2024-10-04	2.9	2.58	2.84	3.1	0.011	0.93	0.0	0.08	8.57	0.00	2.451	8.84	0.00	0.0	100.0	0.0	-4.08	0.41	0.81	6.41	3.1	0.051	0.55	0.0	0.04	9.93	0.00	2.490	0.76	3.33	0.0	100.0	0.0	-4.99	1.17	0.43	0.84	6.86	2064	276	24	0	12	0	0	logfile
✔	9GZT	51734	2025-06-04	2024-10-04	2.9	3.05	2.86	3.1	0.007	0.84	0.0	0.05	10.90	0.00	2.597	6.61	0.00	0.0	100.0	0.0	-3.15	0.54	0.86	6.19	3.1	0.049	0.54	0.0	0.04	12.75	0.00	2.322	0.93	5.26	0.0	100.0	0.0	-3.71	1.19	0.48	0.90	6.01	3924	528	36	0	12	0	0	logfile
✔	9DUS	47176	2025-06-11	2024-10-04	3.12	2.16	3.15	2.0	0.004	0.73	0.0	0.05	11.12	0.01	2.307	2.81	0.00	3.0	97.0	0.0	-1.34	0.76	0.77	3.08	2.0	0.004	0.58	0.0	0.04	14.63	0.00	2.479	6.17	1.34	3.6	96.4	0.0	1.58	1.33	0.77	0.79	2.74	12702	1590	5	0	0	0	0	logfile
✔	9GZS	51733	2025-06-04	2024-10-04	3.1	3.24	3.07	3.3	0.009	0.83	0.0	0.07	11.05	0.00	2.658	8.18	3.45	0.0	100.0	0.0	-2.04	0.41	0.84	5.31	3.3	0.043	0.66	0.0	0.05	11.52	0.00	1.863	1.74	2.30	2.2	97.8	0.0	-3.94	1.17	0.44	0.86	6.67	3000	402	30	0	12	0	0	logfile
✔	9DUT	47177	2025-06-17	2024-10-04	3.3	2.16	3.32	1.9	0.004	0.87	1.0	0.05	11.13	0.01	2.255	3.33	0.00	3.9	96.1	0.0	-1.33	0.74	0.73	2.64	2.0	0.004	0.92	0.0	0.04	14.19	0.00	1.666	8.85	1.84	4.5	95.5	0.0	1.38	0.53	0.75	0.75	2.51	19912	2499	7	0	0	0	0	logfile
✔	9DUU	47179	2025-06-16	2024-10-04	3.4	3.70	3.43	3.7	0.005	0.77	3.0	0.04	17.76	0.00	1.752	10.45	0.85	4.4	95.4	0.3	0.69	0.64	0.86	1.79	3.7	0.002	0.58	0.0	0.04	17.60	0.00	2.271	6.99	2.91	4.6	95.2	0.3	0.77	0.30	0.64	0.86	1.71	17953	2268	26	0	19	0	0	logfile
✔	9GZR	51732	2025-06-15	2024-10-04	2.45	2.23	2.47	1.9	0.003	0.65	0.0	0.04	18.44	0.01	2.186	5.97	3.83	3.5	96.3	0.2	-0.94	0.85	0.86	2.12	1.9	0.003	0.62	0.0	0.04	18.27	0.01	2.513	3.72	3.89	3.7	96.1	0.2	-0.39	0.90	0.85	0.86	2.51	17754	2358	12	0	0	0	0	logfile
✔	9GZX	51736	2025-06-04	2024-10-04	3.1	3.13	3.01	3.1	0.010	1.04	0.0	0.10	11.52	0.00	2.508	10.48	3.45	0.0	100.0	0.0	-2.02	0.45	0.86	5.99	3.1	0.054	0.64	0.0	0.04	13.50	0.00	2.180	0.17	4.89	3.3	96.7	0.0	-2.88	0.60	0.47	0.88	6.33	3006	402	30	0	12	0	0	logfile
✔	9GZY	51737	2025-06-04	2024-10-04	3.0	3.12	2.93	3.1	0.008	0.80	0.0	0.05	11.92	0.00	2.446	7.26	0.00	0.0	100.0	0.0	-2.35	0.51	0.81	6.20	3.1	0.061	0.69	0.0	0.05	13.61	0.00	2.430	1.89	0.26	0.3	99.7	0.0	-3.64	0.62	0.45	0.85	6.12	3276	444	36	0	12	0	0	logfile
✔	9DUV	47180	2025-06-16	2024-10-04	3.3	3.73	3.43	3.7	0.006	0.89	0.0	0.05	18.91	0.00	1.752	11.79	1.06	5.0	94.8	0.2	0.26	0.62	0.84	2.05	3.7	0.003	0.62	0.0	0.05	18.28	0.00	2.015	6.52	3.38	4.6	95.4	0.0	0.47	0.32	0.62	0.84	2.04	17947	2268	26	0	19	0	0	logfile
✔	9GZW	51735	2025-06-04	2024-10-04	2.9	2.96	2.83	3.1	0.008	0.85	0.0	0.06	11.34	0.00	2.673	1.70	4.76	0.0	100.0	0.0	-2.72	0.48	0.86	7.38	3.0	0.068	0.69	0.0	0.05	11.75	0.00	2.181	0.00	1.19	3.8	96.2	0.0	-4.25	0.92	0.48	0.88	7.84	2160	288	24	0	12	0	0	logfile
✔	9GZ6	51726	2025-06-04	2024-10-03	3.3	3.30	3.22	3.6	0.008	0.96	0.0	0.04	10.54	0.00	2.259	8.94	0.00	0.0	100.0	0.0	-2.82	0.54	0.80	2.32	3.6	0.071	0.69	0.0	0.04	14.98	0.00	2.402	10.28	3.41	8.0	92.0	0.0	-4.69	0.94	0.53	0.84	3.52	2316	312	24	0	12	0	0	logfile
✔	9GZ2	51720	2025-06-05	2024-10-03	2.9	3.11	2.89	3.1	0.007	1.13	0.0	0.07	14.04	0.01	2.068	1.62	0.15	4.0	96.0	0.0	-1.75	0.65	0.82	4.55	3.1	0.003	0.64	0.0	0.04	16.89	0.00	2.121	6.24	2.41	2.2	97.8	0.0	0.33	1.00	0.68	0.85	3.51	6200	764	2	0	4	0	0	logfile
✔	9GZ3	51721	2025-06-05	2024-10-03	3.4	3.74	3.44	3.7	0.007	1.07	0.0	0.06	14.74	0.01	2.088	1.54	0.15	3.6	96.2	0.3	-1.99	0.72	0.78	3.42	3.7	0.003	0.65	0.0	0.04	16.47	0.00	2.067	6.09	1.66	2.6	97.4	0.0	0.45	1.29	0.68	0.79	2.18	6180	764	2	0	3	0	0	logfile
✔	9DUM	47170	2025-06-19	2024-10-03	3.56	3.88	3.61	3.9	0.003	0.62	0.0	0.04	18.32	0.00	2.198	7.54	4.95	5.6	94.2	0.2	-0.95	0.62	0.76	1.09	3.9	0.003	0.59	0.0	0.04	18.29	0.00	2.292	6.34	4.36	5.6	94.4	0.1	-0.29	0.53	0.69	0.81	1.03	22662	2915	6	0	0	0	0	logfile
✔	9DUo	47172	2025-06-11	2024-10-03	2.66	2.89	2.66	2.9	0.002	0.48	0.0	0.04	17.78	0.00	2.186	5.97	3.20	1.2	98.8	0.0	1.68	0.69	0.87	3.49	2.9	0.002	0.52	0.0	0.04	17.82	0.00	2.403	5.30	3.27	0.8	99.2	0.0	2.26	0.17	0.67	0.86	3.26	13187	1736	4	0	0	0	0	logfile
✔	9JTC	61794	2025-06-08	2024-10-03	2.99	2.07	2.99	1.8	0.003	0.56	0.0	0.04	13.02	0.00	2.583	3.79	0.91	2.2	97.8	0.0	0.75	0.73	0.73	3.32	1.8	0.004	0.63	0.0	0.04	15.36	0.00	2.501	7.35	1.72	2.8	97.2	0.0	0.73	0.72	0.73	0.73	2.94	9158	1163	4	0	1	0	0	logfile

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