Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JNT	61626	2025-06-14	2024-09-24	2.7	3.43	2.76	3.1	0.005	0.67	0.0	0.04	26.48	0.00	1.985	10.74	0.00	6.6	93.3	0.1	0.16	0.87	0.85	2.78	3.1	0.006	0.68	0.0	0.04	26.94	0.00	1.902	7.56	3.01	6.4	93.6	0.0	0.69	0.31	0.86	0.85	2.25	16283	1283	12	292	2	0	0	logfile
✔	9JNU	61627	2025-06-14	2024-09-24	2.5	3.28	2.53	3.0	0.006	0.71	0.0	0.04	27.46	0.00	1.978	10.89	2.55	3.2	96.6	0.2	0.87	0.87	0.85	2.55	3.0	0.004	0.62	0.0	0.04	26.96	0.00	2.003	7.31	2.73	3.3	96.7	0.0	1.74	0.28	0.86	0.84	2.24	16310	1286	12	292	2	0	0	logfile
✔	9JoD	61659	2025-06-15	2024-09-24	3.2	3.24	2.96	3.2	0.005	0.69	0.0	0.05	15.83	0.00	2.208	4.49	1.39	4.3	95.7	0.0	-1.39	0.60	0.90	3.25	3.2	0.003	0.55	0.0	0.04	16.24	0.00	2.509	3.53	2.17	3.3	96.7	0.0	-0.48	0.41	0.59	0.90	3.25	16849	2135	7	0	0	0	0	logfile
✔	9Jo2	61641	2025-06-14	2024-09-24	3.0	3.52	3.11	3.2	0.010	0.84	1.0	0.05	27.13	0.01	1.990	15.93	0.18	9.1	90.6	0.3	-0.79	0.86	0.84	1.77	3.2	0.004	0.68	0.0	0.04	26.68	0.00	2.508	10.48	1.01	6.9	93.1	0.1	0.76	1.50	0.87	0.87	1.66	16225	1279	12	292	1	0	0	logfile
✔	9JNZ	61632	2025-06-14	2024-09-24	3.0	3.56	3.08	3.2	0.005	0.69	1.0	0.04	26.60	0.00	2.171	12.23	0.54	5.2	94.7	0.1	-0.14	0.88	0.87	2.26	3.2	0.004	0.69	0.0	0.04	26.98	0.00	2.465	9.36	1.45	4.8	95.2	0.0	1.15	1.58	0.88	0.88	1.59	16323	1291	12	292	1	0	0	logfile
✔	9DQX	47117	2025-06-26	2024-09-24	3.4	2.45	3.29	2.1	0.004	0.88	0.0	0.06	12.54	0.01	2.196	6.86	0.00	5.9	94.0	0.1	-1.44	0.48	0.74	2.67	2.0	0.003	0.77	0.0	0.05	15.64	0.00	2.382	11.79	3.32	5.9	94.0	0.1	-0.92	0.50	0.49	0.76	2.25	30900	3995	20	0	12	0	0	logfile
✔	9JNV	61628	2025-06-14	2024-09-24	3.0	3.57	3.01	3.2	0.012	0.87	0.0	0.05	25.75	0.00	1.969	17.05	0.35	7.9	91.8	0.2	-0.62	0.85	0.85	2.18	3.2	0.003	0.63	0.0	0.03	25.74	0.00	2.032	8.80	1.56	4.2	95.8	0.0	1.41	2.21	0.85	0.85	1.27	16836	1349	12	292	2	0	0	logfile
✔	9GVJ	51636	2025-06-15	2024-09-24	2.91	3.20	2.84	3.1	0.002	0.52	0.0	0.04	15.91	0.00	2.184	5.74	2.22	3.2	96.8	0.0	0.26	0.73	0.90	3.60	3.1	0.004	0.58	0.0	0.05	15.85	0.00	2.096	3.76	2.01	3.6	96.4	0.0	0.30	0.21	0.72	0.90	3.58	17636	2304	12	0	14	177	0	logfile
✔	9JNW	61629	2025-06-15	2024-09-24	2.9	3.55	2.96	3.2	0.008	0.78	0.0	0.04	26.52	0.00	1.968	15.11	0.08	7.2	92.5	0.3	-0.18	0.84	0.85	2.31	3.2	0.004	0.66	0.0	0.04	26.59	0.00	2.017	10.45	1.61	5.9	94.1	0.0	0.89	0.41	0.84	0.85	1.40	17087	1372	12	294	2	0	0	logfile
✔	9JNX	61630	2025-06-14	2024-09-24	3.0	3.52	3.07	3.2	0.006	0.69	1.0	0.04	26.30	0.00	1.990	11.19	0.17	7.3	92.6	0.2	-0.07	0.88	0.86	2.01	3.2	0.003	0.64	0.0	0.04	26.74	0.00	2.082	8.79	1.56	5.6	94.3	0.1	1.24	0.40	0.88	0.87	1.25	16809	1346	12	292	2	0	0	logfile
✔	9DR1	47120	2025-06-22	2024-09-24	3.7	3.74	3.38	3.6	0.005	0.56	0.0	0.04	19.30	0.00	2.083	10.83	0.33	3.3	96.7	0.0	0.65	0.83	0.83	1.43	3.6	0.002	0.54	0.0	0.04	19.64	0.00	2.048	7.92	2.81	2.6	97.4	0.0	0.86	1.06	0.84	0.85	1.32	26245	3173	9	69	1	0	0	logfile
✔	9Jo5	61644	2025-06-15	2024-09-24	2.8	3.44	2.86	3.1	0.011	0.80	0.0	0.05	26.06	0.00	1.943	14.75	0.09	7.3	92.6	0.1	-0.42	0.86	0.86	2.40	3.1	0.008	0.72	0.0	0.04	26.35	0.00	1.913	10.61	2.13	5.3	94.7	0.0	0.87	1.58	0.84	0.85	1.97	17033	1379	12	292	2	0	0	logfile
✔	9JNP	61624	2025-06-13	2024-09-23	2.3	3.23	2.38	2.9	0.008	0.75	0.0	0.04	26.69	0.01	2.067	7.38	1.45	3.8	96.2	0.0	0.83	0.87	0.86	3.01	2.9	0.006	0.61	0.0	0.04	26.28	0.00	2.072	5.56	1.83	2.9	97.1	0.0	1.91	0.28	0.88	0.87	3.03	15781	1221	12	292	2	0	0	logfile
✔	9JMZ	61616	2025-06-10	2024-09-22	2.91	4.17	2.98	3.5	0.004	0.90	0.0	0.05	14.15	0.00	2.176	5.57	0.78	3.7	96.3	0.0	0.45	0.92	0.90	3.46	3.5	0.003	0.66	0.0	0.04	14.25	0.00	2.494	3.65	1.25	3.7	96.3	0.0	0.30	0.76	0.92	0.90	3.59	12001	1459	12	0	22	0	0	logfile
✘	9DPL	47106	2025-06-16	2024-09-22	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10555	1092	10	76	6	0	0	logfile
✔	9JN0	61617	2025-06-10	2024-09-22	2.84	3.91	2.92	3.4	0.003	0.71	0.0	0.05	14.14	0.00	2.199	4.38	0.70	3.5	96.5	0.0	0.44	0.90	0.89	3.49	3.4	0.002	0.63	0.0	0.04	14.12	0.00	2.532	3.19	1.17	3.9	96.1	0.0	0.45	0.29	0.90	0.89	3.59	12001	1459	11	0	22	0	0	logfile
✔	9GV5	51624	2025-06-05	2024-09-22	4.0	4.59	4.06	4.6	0.002	0.52	0.0	0.04	11.20	0.00	2.306	5.31	0.35	6.9	93.1	0.0	0.71	0.63	0.60	—	4.6	0.003	0.60	0.0	0.04	14.40	0.00	2.264	9.15	0.70	8.6	91.4	0.0	0.44	0.89	0.62	0.61	—	5465	355	1	0	0	0	2766	logfile
✔	9DPE	47104	2025-06-10	2024-09-21	3.86	4.57	3.79	3.9	0.002	0.45	0.0	0.04	7.39	0.00	2.119	3.63	0.15	1.8	98.2	0.0	1.23	0.86	0.79	2.16	3.9	0.003	0.56	0.0	0.04	11.04	0.00	2.386	5.65	1.51	3.8	96.2	0.0	0.02	0.83	0.87	0.81	2.46	11800	779	5	0	4	0	5786	logfile
✘	9DPB	47101	2025-06-15	2024-09-20	2.9	3.52	2.89	3.3	0.005	0.77	0.0	0.04	19.84	0.00	2.231	9.93	1.45	3.3	96.7	0.0	-0.31	0.83	0.76	3.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9836	1013	8	73	7	0	0	logfile
✔	9JM0	61595	2025-06-23	2024-09-20	2.7	3.13	2.96	3.1	0.005	0.66	0.0	0.04	26.16	0.00	1.990	11.89	2.87	3.8	96.2	0.0	0.67	0.72	0.74	2.84	3.1	0.004	0.59	0.0	0.04	25.66	0.00	2.471	8.81	2.97	3.8	96.2	0.0	0.95	1.59	0.74	0.83	2.71	28012	2132	21	512	2	0	0	logfile

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