Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JBo	61321	2025-06-04	2024-08-27	3.39	3.02	2.39	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.005	0.82	0.0	0.06	18.87	0.00	2.547	8.01	4.35	13.4	86.6	0.0	-2.23	1.04	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JB0	61303	2025-06-04	2024-08-26	2.9	3.06	2.31	3.1	0.004	0.40	0.0	0.06	18.89	0.00	2.623	6.97	0.69	6.9	93.1	0.0	-0.14	0.62	0.87	7.08	3.1	0.003	0.42	0.0	0.06	18.46	0.00	2.628	7.47	0.69	3.7	96.3	0.0	-0.27	0.85	0.60	0.87	6.97	3012	396	24	0	12	0	0	logfile
✔	9JB1	61304	2025-06-04	2024-08-26	2.5	2.55	2.32	2.6	0.001	0.60	0.0	0.06	19.34	0.00	2.660	7.64	0.00	0.0	100.0	0.0	-0.86	0.66	0.90	6.53	2.6	0.005	0.61	0.0	0.06	18.93	0.00	2.636	4.98	1.39	2.6	97.4	0.0	-1.18	0.88	0.66	0.91	7.47	3012	396	24	0	12	0	0	logfile
✔	9DCH	46751	2025-06-21	2024-08-26	3.4	4.00	3.31	2.5	0.002	0.68	2.0	0.04	14.77	0.01	2.207	9.57	2.18	8.2	91.7	0.2	-1.21	0.65	0.47	0.55	2.6	0.003	0.70	0.0	0.04	15.34	0.00	2.466	10.17	3.36	8.9	90.9	0.2	-1.63	1.13	0.74	0.59	1.16	24433	3586	15	10	14	0	0	logfile
✔	9JAZ	61302	2025-06-04	2024-08-26	3.0	3.25	2.18	3.3	0.004	0.52	0.0	0.05	15.94	0.00	2.622	5.31	0.00	3.4	96.6	0.0	-0.70	0.56	0.87	7.33	3.3	0.004	0.55	0.0	0.06	16.70	0.00	2.689	6.64	2.43	4.0	96.0	0.0	-0.77	0.29	0.50	0.86	7.12	3012	396	24	0	12	0	0	logfile
✔	9JB2	61305	2025-06-04	2024-08-26	2.9	2.11	2.74	3.0	0.003	0.43	0.0	0.05	12.57	0.00	2.256	5.91	0.27	0.9	99.1	0.0	-2.12	0.45	0.82	4.81	3.0	0.005	0.57	0.0	0.05	16.97	0.00	2.505	6.68	3.51	2.3	97.7	0.0	-2.29	0.32	0.40	0.81	4.92	3890	500	35	0	20	0	0	logfile
✔	9JAQ	61300	2025-06-05	2024-08-25	2.99	3.16	2.98	3.2	0.005	0.63	0.0	0.04	14.52	0.00	2.200	9.72	0.29	7.7	91.8	0.5	-3.44	0.71	0.79	3.90	3.2	0.004	0.63	0.0	0.04	17.24	0.00	2.529	7.45	3.37	5.9	94.1	0.0	-0.64	1.77	0.67	0.81	3.50	5998	736	2	0	0	0	0	logfile
✔	9JAo	61296	2025-06-12	2024-08-25	3.1	3.42	3.09	3.2	0.006	0.71	0.0	0.04	24.27	0.00	1.011	12.06	0.19	2.8	97.1	0.1	0.25	0.78	0.72	1.72	3.2	0.004	0.64	0.0	0.04	24.85	0.00	2.018	8.24	1.43	3.0	97.0	0.0	1.60	1.21	0.87	0.84	1.29	13916	1200	11	208	3	0	0	logfile
✔	9GKM	51429	2025-06-10	2024-08-25	3.69	2.37	3.69	2.1	0.003	0.50	0.0	0.04	13.90	0.00	2.216	6.25	0.00	5.2	94.8	0.0	0.90	0.74	0.72	1.35	2.1	0.003	0.58	0.0	0.04	15.54	0.00	2.514	6.07	0.91	5.9	94.1	0.0	0.78	0.34	0.74	0.73	1.20	11231	1446	5	0	1	0	0	logfile
✔	9JA6	61291	2025-06-05	2024-08-24	4.4	3.40	4.32	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.3	0.003	0.63	0.0	0.04	13.21	0.00	2.395	8.40	0.00	1.2	98.8	0.0	3.19	1.55	0.71	0.77	—	4880	588	4	0	0	0	0	logfile
✔	9DBY	46728	2025-06-12	2024-08-24	2.8	3.83	2.82	2.8	0.004	0.67	0.0	0.04	26.42	0.00	2.249	7.40	0.23	2.6	97.4	0.0	2.14	0.86	0.74	0.79	2.9	0.003	0.65	0.0	0.04	26.26	0.00	2.380	7.97	1.41	2.8	97.2	0.0	2.28	0.93	0.93	0.89	1.65	14368	1081	17	296	5	0	0	logfile
✔	9JA5	61290	2025-06-07	2024-08-24	2.7	3.43	2.70	3.3	0.014	1.15	0.0	0.06	14.30	0.01	2.117	13.83	0.00	12.9	87.1	0.0	-2.73	0.62	0.83	2.49	3.3	0.003	0.70	0.0	0.04	18.06	0.00	2.588	7.64	1.92	7.0	93.0	0.0	1.84	0.97	0.54	0.75	1.19	8469	1002	12	0	0	123	0	logfile
✔	9DBQ	46724	2025-06-09	2024-08-23	2.9	3.52	2.90	3.5	0.003	0.56	0.0	0.04	12.63	0.00	2.057	2.92	0.10	2.2	97.8	0.0	1.15	0.67	0.73	1.85	3.5	0.003	0.62	0.0	0.04	14.91	0.00	2.431	7.85	2.10	2.7	97.3	0.0	2.12	1.40	0.68	0.74	1.46	10062	1182	4	0	20	0	0	logfile
✔	9JA0	61286	2025-06-17	2024-08-23	3.14	3.38	3.16	3.4	0.003	0.67	0.0	0.04	11.92	0.01	2.319	8.89	0.00	2.8	97.2	0.0	-4.28	0.75	0.86	3.05	3.4	0.003	0.53	0.0	0.04	14.26	0.00	2.638	5.00	1.10	4.3	95.7	0.0	0.81	0.93	0.72	0.85	2.76	19716	2628	12	0	0	0	0	logfile
✔	9JA1	61287	2025-06-23	2024-08-23	2.98	3.25	3.11	3.3	0.003	0.66	0.0	0.04	13.32	0.00	2.205	9.74	0.07	4.5	95.5	0.0	-0.43	0.69	0.86	3.61	3.3	0.004	0.61	0.0	0.04	16.91	0.00	2.547	6.69	2.47	4.6	95.4	0.0	0.09	1.29	0.70	0.88	2.97	27832	3392	21	45	9	0	0	logfile
✔	9DAK	46691	2025-06-06	2024-08-22	2.4	2.74	2.43	2.6	0.014	1.29	0.0	0.09	13.17	0.00	1.935	1.68	0.47	1.5	98.5	0.0	0.51	0.78	0.84	4.93	2.6	0.003	0.68	0.0	0.05	14.12	0.00	2.327	1.90	0.78	1.1	98.9	0.0	1.95	0.45	0.74	0.85	4.33	7303	899	13	0	23	144	0	logfile
✔	9GJU	51403	2025-06-18	2024-08-22	2.8	2.29	—	2.7	0.002	0.47	0.0	0.04	15.98	0.00	1.865	5.75	0.95	1.5	98.4	0.1	1.92	0.85	0.84	2.69	2.7	0.004	0.55	0.0	0.04	16.77	0.00	1.953	4.67	2.24	1.4	98.5	0.1	2.24	1.22	0.86	0.88	3.06	20935	2540	8	21	4	0	0	logfile
✔	9J98	61255	2025-06-05	2024-08-22	3.33	3.60	3.39	3.6	0.010	1.10	12.0	0.07	19.13	0.02	2.236	14.07	8.66	10.3	89.4	0.3	-3.04	0.60	0.84	1.66	3.6	0.003	0.59	0.0	0.04	16.70	0.00	2.613	7.22	5.68	7.8	92.2	0.0	0.93	0.50	0.57	0.83	1.74	6752	794	4	0	4	0	0	logfile
✔	9DAo	46695	2025-06-08	2024-08-22	2.8	3.05	2.81	3.1	0.008	0.97	0.0	0.05	16.57	0.01	1.978	6.22	2.59	4.5	95.4	0.2	-0.40	0.66	0.82	3.69	3.1	0.004	0.69	0.0	0.05	16.69	0.01	1.998	5.13	2.96	4.5	95.4	0.2	-0.42	0.33	0.68	0.85	3.94	9804	1264	6	0	6	0	0	logfile
✔	9J97	61254	2025-06-05	2024-08-22	3.3	3.54	3.13	3.6	0.014	1.86	15.0	0.09	19.36	0.01	2.155	12.71	12.25	6.8	92.2	0.9	-4.11	0.68	0.86	2.08	3.6	0.003	0.63	0.0	0.04	16.75	0.00	2.613	4.46	4.76	4.7	95.3	0.0	0.34	0.45	0.58	0.82	2.77	6704	786	4	0	6	0	0	logfile

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