Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9D81	46624	2025-06-12	2024-08-18	2.4	3.06	2.43	3.0	0.008	0.89	3.0	0.05	14.87	0.01	1.518	75.36	1.41	3.9	95.5	0.6	-0.83	0.66	0.47	0.36	2.9	0.004	0.75	0.0	0.05	16.51	0.01	1.215	13.76	1.47	4.2	95.3	0.5	-1.23	2.00	0.82	0.88	4.70	14475	1875	3	0	0	0	0	logfile
✔	9J77	61196	2025-06-27	2024-08-18	3.56	3.84	3.60	3.7	0.003	0.57	0.0	0.04	15.14	0.00	2.055	6.74	0.00	5.1	94.9	0.0	-1.33	0.78	0.80	1.79	3.7	0.003	0.65	0.0	0.04	17.06	0.00	2.033	10.73	2.12	5.0	95.0	0.0	0.19	0.67	0.78	0.78	1.61	26209	3248	14	0	26	0	0	logfile
✔	9D84	46628	2025-06-16	2024-08-18	2.4	2.91	2.25	3.0	0.005	0.73	0.0	0.05	14.82	0.00	1.924	22.28	1.25	3.1	96.8	0.1	0.12	0.64	0.45	0.64	2.7	0.004	0.69	0.0	0.05	16.48	0.00	2.456	12.69	1.55	2.8	97.2	0.0	-0.13	1.54	0.85	0.92	4.41	19029	2529	6	0	0	0	0	logfile
✔	9J7A	61199	2025-06-10	2024-08-18	4.13	4.32	4.10	4.2	0.003	0.66	0.0	0.04	14.85	0.01	2.244	8.56	0.08	6.4	93.6	0.0	-0.81	0.74	0.78	—	4.2	0.003	0.70	0.0	0.04	14.69	0.00	2.501	15.43	0.00	7.4	92.6	0.0	0.27	0.68	0.75	0.80	—	11036	1389	6	0	22	0	0	logfile
✔	9J7C	61201	2025-06-08	2024-08-18	3.0	3.30	3.01	3.3	0.005	0.89	4.0	0.05	15.07	0.02	2.235	6.26	0.63	5.9	93.8	0.3	-4.19	0.62	0.85	2.34	3.3	0.003	0.66	0.0	0.04	14.78	0.00	2.568	3.92	1.89	4.8	95.2	0.0	-1.63	0.98	0.70	0.88	3.22	9252	1192	6	0	9	6	0	logfile
✔	9J7B	61200	2025-06-18	2024-08-18	4.12	4.43	4.20	4.2	0.003	0.61	0.0	0.04	14.97	0.00	2.190	10.69	0.00	5.5	94.5	0.0	-1.08	0.80	0.69	—	4.2	0.003	0.65	0.0	0.04	14.78	0.00	2.288	15.31	0.00	6.5	93.5	0.0	0.14	0.75	0.83	0.78	—	20578	2679	11	0	21	0	0	logfile
✔	9J6X	61188	2025-06-15	2024-08-17	2.4	2.57	2.47	2.6	0.003	0.54	0.0	0.04	16.82	0.00	2.520	3.26	1.87	3.1	96.9	0.0	0.35	0.68	0.86	4.24	2.6	0.004	0.58	0.0	0.05	17.02	0.00	2.471	3.56	3.96	4.0	96.0	0.0	0.49	0.88	0.72	0.89	4.21	16969	2156	3	0	0	0	0	logfile
✔	9D7K	46607	2025-06-04	2024-08-16	3.0	2.55	3.03	2.9	0.002	0.55	0.0	0.04	17.29	0.00	2.308	9.53	1.60	3.1	96.9	0.0	0.63	0.65	0.67	2.01	2.2	0.004	0.89	0.0	0.05	18.71	0.01	2.501	18.53	4.15	4.8	95.2	0.0	0.39	1.35	0.66	0.72	1.98	2843	359	1	0	0	0	0	logfile
✔	9D70	46599	2025-06-17	2024-08-16	3.3	4.03	3.38	3.2	0.013	1.28	0.0	0.08	21.06	0.01	2.364	31.87	0.00	0.0	100.0	0.0	-4.81	0.90	0.82	1.84	3.1	0.093	3.88	250.0	0.25	27.98	0.02	1.455	109.93	29.65	48.2	51.6	0.2	-7.54	3.61	0.93	0.91	1.62	20880	1440	360	0	360	0	0	logfile
✔	9GH4	51346	2025-06-05	2024-08-15	3.8	2.34	3.66	3.5	0.002	0.60	0.0	0.04	16.59	0.00	2.220	7.84	1.06	2.4	97.6	0.0	-2.02	0.69	0.70	1.25	2.2	0.005	0.74	0.0	0.05	17.68	0.00	2.482	14.92	5.47	7.8	92.2	0.0	-3.54	1.08	0.75	0.74	2.29	5454	750	3	0	0	0	0	logfile
✔	9GH5	51347	2025-06-09	2024-08-15	2.7	2.18	2.69	2.0	0.010	0.89	0.0	0.06	17.19	0.01	2.174	9.98	2.54	3.7	96.3	0.0	-1.47	0.70	0.78	3.86	1.9	0.007	0.76	0.0	0.05	17.38	0.00	2.403	7.71	5.80	5.3	94.7	0.0	-1.81	1.31	0.81	0.84	4.04	10383	1347	12	0	18	3	0	logfile
✔	9D6F	46596	2025-06-05	2024-08-15	4.24	4.50	4.13	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.003	0.71	0.0	0.04	13.80	0.00	2.556	6.66	0.00	7.7	92.3	0.0	-2.20	0.49	0.68	0.77	—	4672	610	5	0	0	0	0	logfile
✔	9J66	61167	2025-06-04	2024-08-15	3.55	3.77	3.46	3.8	0.003	0.55	0.0	0.04	12.70	0.00	2.298	7.69	0.00	5.8	94.2	0.0	-2.15	0.55	0.72	2.49	3.8	0.003	0.61	0.0	0.04	14.77	0.00	2.533	8.34	3.82	5.8	94.2	0.0	-1.69	0.42	0.56	0.73	2.25	4044	559	4	0	0	0	0	logfile
✔	9GH6	51348	2025-06-04	2024-08-15	3.0	2.41	3.20	2.2	0.014	0.91	0.0	0.06	13.76	0.00	2.201	8.31	1.12	4.0	96.0	0.0	0.22	0.51	0.67	3.38	2.2	0.004	0.68	0.0	0.05	15.22	0.00	2.246	8.62	4.47	6.1	93.9	0.0	-0.37	0.71	0.59	0.76	2.30	3159	200	2	0	7	0	1498	logfile
✔	9D6A	46591	2025-06-04	2024-08-14	2.6	2.76	2.61	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.50	0.0	0.04	16.59	0.00	2.182	6.27	1.18	1.5	98.5	0.0	2.16	0.35	0.50	0.86	3.05	3105	407	3	0	4	9	0	logfile
✔	9D69	46590	2025-06-04	2024-08-14	2.99	3.21	3.06	3.2	0.003	0.55	0.0	0.04	15.99	0.01	2.096	3.87	0.00	1.7	98.3	0.0	0.78	0.46	0.84	3.65	3.2	0.003	0.59	0.0	0.04	16.66	0.00	2.243	7.43	2.33	2.2	97.8	0.0	2.13	0.94	0.42	0.82	2.51	3143	413	3	0	4	0	0	logfile
✔	9D61	46585	2025-06-06	2024-08-14	3.58	3.05	—	3.8	0.004	0.74	0.0	0.05	12.93	0.00	2.249	5.72	0.00	6.7	93.3	0.0	-1.57	0.67	0.63	0.77	3.8	0.004	0.76	0.0	0.04	16.22	0.00	2.482	12.91	3.03	6.3	93.7	0.0	-0.47	0.90	0.69	0.66	1.38	6895	903	5	0	1	0	0	logfile
✔	9D66	46586	2025-06-08	2024-08-14	2.98	3.18	2.93	3.2	0.004	0.68	0.0	0.04	13.81	0.00	2.055	3.35	0.00	1.8	98.2	0.0	-1.67	0.58	0.79	3.71	3.2	0.003	0.55	0.0	0.04	15.39	0.00	2.190	7.00	2.66	1.2	98.8	0.0	1.76	0.53	0.63	0.82	2.37	9306	1221	10	0	12	12	0	logfile
✔	9J60	61158	2025-06-18	2024-08-14	2.7	3.00	2.85	3.1	0.004	0.62	0.0	0.04	13.42	0.00	1.836	3.29	0.96	4.7	95.3	0.0	-0.84	0.67	0.83	4.50	3.1	0.006	0.63	0.0	0.04	14.43	0.00	2.337	2.05	1.30	6.3	93.7	0.0	-0.88	0.40	0.67	0.84	4.25	20967	1354	2	0	0	0	10175	logfile
✔	9D67	46588	2025-06-08	2024-08-14	2.87	3.10	1.44	3.2	0.003	0.60	0.0	0.04	16.10	0.01	2.143	4.81	0.00	2.1	97.9	0.0	0.93	0.52	0.74	2.24	3.2	0.003	0.57	0.0	0.04	16.30	0.00	2.166	8.46	2.08	1.6	98.4	0.0	1.68	1.18	0.64	0.81	2.68	9297	1218	9	0	15	3	0	logfile

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