Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9J36	61107	2025-06-15	2024-08-07	2.5	2.93	2.71	2.9	0.010	1.30	11.0	0.08	15.08	0.01	2.036	10.82	0.86	6.6	93.4	0.0	-4.35	0.59	0.74	2.31	2.9	0.002	0.59	0.0	0.04	16.66	0.00	2.535	6.81	1.78	5.8	94.2	0.0	-0.18	0.51	0.54	0.73	2.05	16960	2092	4	0	0	0	0	logfile
✔	9J34	61105	2025-06-14	2024-08-07	2.51	2.71	2.37	2.7	0.013	1.43	2.0	0.08	15.20	0.01	2.217	7.38	0.44	3.3	96.7	0.0	-5.13	0.59	0.76	3.72	2.6	0.003	0.66	0.0	0.04	16.91	0.00	2.580	5.77	2.05	2.4	97.6	0.0	0.10	0.58	0.67	0.83	3.10	16427	2008	9	0	3	8	0	logfile
✔	9GE7	51292	2025-06-08	2024-08-07	3.66	4.23	3.66	3.9	0.005	0.64	0.0	0.04	15.24	0.00	1.817	13.40	3.10	4.6	95.4	0.0	1.66	0.79	0.89	1.17	3.9	0.003	0.60	0.0	0.04	15.67	0.00	1.955	7.79	1.94	2.7	97.3	0.0	2.42	0.87	0.78	0.88	0.93	9773	1256	5	0	4	0	0	logfile
✔	9GE8	51293	2025-06-09	2024-08-07	4.55	5.18	4.54	4.6	0.002	0.46	0.0	0.04	10.67	0.00	2.082	10.28	1.96	1.6	98.4	0.0	2.68	0.82	0.83	—	4.6	0.002	0.62	0.0	0.04	11.79	0.00	1.956	10.32	0.00	2.2	97.8	0.0	1.97	1.57	0.83	0.84	—	11130	1426	6	0	4	0	0	logfile
✔	9J31	61104	2025-06-07	2024-08-07	3.05	3.24	3.06	3.3	0.003	0.66	0.0	0.04	17.22	0.01	2.110	14.00	0.21	3.9	96.1	0.0	0.38	0.52	0.70	2.03	3.3	0.003	0.56	0.0	0.04	17.57	0.00	2.429	8.40	3.29	4.2	95.7	0.1	0.80	1.14	0.61	0.79	2.75	8994	1144	5	0	0	0	0	logfile
✘	9J35	61106	2025-06-15	2024-08-07	2.71	2.86	2.75	2.9	0.014	1.44	4.0	0.07	15.06	0.01	2.161	4.58	0.76	7.4	92.5	0.0	-5.07	0.70	0.83	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16960	2092	4	0	0	0	0	logfile
✔	9J2F	61095	2025-06-28	2024-08-06	2.2	2.12	2.21	2.2	0.018	1.69	0.0	0.06	19.25	0.02	2.020	10.31	1.82	3.2	96.8	0.0	1.53	0.73	0.89	6.42	2.2	0.005	0.75	0.0	0.04	18.17	0.00	2.021	9.63	1.23	2.9	97.1	0.0	1.67	0.26	0.72	0.89	5.58	32918	3464	140	0	89	423	0	logfile
✔	9D0A	46448	2025-06-07	2024-08-06	3.1	2.47	3.18	2.2	0.003	0.53	0.0	0.04	14.27	0.00	2.264	7.74	0.00	4.3	95.7	0.0	-0.63	0.77	0.75	2.83	2.2	0.003	0.67	0.0	0.04	15.79	0.00	2.493	9.90	2.21	4.1	95.9	0.0	0.31	1.07	0.76	0.73	1.81	8416	1083	5	0	0	0	0	logfile
✔	9J1P	61077	2025-06-08	2024-08-05	2.99	3.44	3.04	3.4	0.003	0.53	0.0	0.04	18.17	0.00	2.191	8.27	2.89	5.8	94.2	0.0	0.94	0.62	0.80	1.82	3.4	0.003	0.58	0.0	0.04	18.13	0.00	2.278	6.48	4.08	5.8	94.2	0.0	0.83	0.22	0.62	0.80	1.68	9385	1186	6	0	0	0	0	logfile
✔	9J1L	61075	2025-06-17	2024-08-05	3.28	3.58	3.52	3.5	0.004	0.61	0.0	0.04	18.18	0.00	2.090	17.79	0.27	6.0	93.4	0.6	-0.60	0.59	0.81	1.28	3.5	0.004	0.63	0.0	0.04	18.54	0.00	2.138	12.18	3.70	6.8	92.6	0.6	-0.79	0.43	0.59	0.82	1.49	20288	2598	17	0	2	0	0	logfile
✔	9CZL	46420	2025-06-05	2024-08-05	2.9	3.25	2.66	3.2	0.023	1.95	0.0	0.09	9.53	0.01	2.463	0.52	0.00	5.6	94.4	0.0	-1.27	0.54	0.85	5.46	3.2	0.005	0.76	0.0	0.05	17.26	0.00	2.577	4.15	1.54	6.7	93.3	0.0	-1.72	1.66	0.45	0.84	5.28	5660	740	10	0	0	0	0	logfile
✔	9CZP	46424	2025-06-05	2024-08-05	3.3	3.59	3.28	3.5	0.021	2.01	0.0	0.11	10.68	0.01	2.402	0.40	0.00	7.0	93.0	0.0	-0.29	0.47	0.84	6.05	3.5	0.007	0.69	0.0	0.06	16.72	0.00	2.529	10.24	3.80	10.3	89.7	0.0	-1.46	1.61	0.44	0.85	4.65	5020	680	20	0	0	0	0	logfile
✔	9CZi	46417	2025-06-05	2024-08-05	3.0	3.03	2.87	3.0	0.021	1.92	0.0	0.10	9.10	0.01	2.435	0.79	0.00	7.0	93.0	0.0	-1.72	0.38	0.80	5.58	3.0	0.007	0.75	0.0	0.05	18.57	0.00	2.452	6.69	2.34	8.3	91.7	0.0	-2.20	0.69	0.48	0.87	4.46	5570	730	10	0	0	0	0	logfile
✘	9J1J	61073	2025-06-17	2024-08-05	3.42	4.26	3.58	3.9	0.004	0.83	0.0	0.05	17.34	0.00	2.057	15.01	0.33	6.6	93.1	0.3	-1.07	0.84	0.85	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19944	2616	18	0	0	0	0	logfile
✔	9CZN	46422	2025-06-05	2024-08-05	2.6	2.70	2.55	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.003	0.58	0.0	0.06	19.00	0.00	2.615	7.75	1.20	5.2	94.8	0.0	-1.03	3.21	0.56	0.87	5.94	5020	680	20	0	0	0	0	logfile
✔	9GD2	51244	2025-06-22	2024-08-04	4.2	6.40	—	3.9	0.006	0.86	0.0	0.06	25.64	0.01	2.148	7.94	0.94	1.7	98.3	0.0	-0.58	0.92	0.85	—	3.9	0.005	0.65	0.0	0.04	25.31	0.00	1.220	14.11	0.00	2.3	97.7	0.0	1.52	0.66	0.92	0.86	—	26638	2104	22	474	3	0	0	logfile
✔	9GD3	51247	2025-06-16	2024-08-04	3.0	3.49	2.92	3.1	0.006	0.85	0.0	0.06	24.31	0.01	2.176	1.23	0.07	2.2	97.8	0.0	-0.07	0.78	0.74	3.10	3.1	0.003	0.63	0.0	0.03	23.87	0.00	1.248	6.39	0.99	1.9	98.1	0.0	2.24	1.09	0.86	0.89	2.41	19030	1630	13	284	3	0	0	logfile
✔	9GD0	51238	2025-06-17	2024-08-04	2.8	3.26	—	3.0	0.006	0.84	0.0	0.05	27.26	0.01	2.229	4.41	0.00	0.5	99.5	0.0	-0.62	0.86	0.82	3.22	3.0	0.004	0.63	0.0	0.03	28.04	0.00	2.484	6.89	2.48	1.4	98.6	0.0	2.48	1.33	0.88	0.86	2.06	20207	1253	16	500	0	0	0	logfile
✔	9GD1	51241	2025-06-23	2024-08-04	4.0	5.21	—	3.9	0.006	0.82	0.0	0.06	25.61	0.01	2.052	7.21	0.39	1.4	98.6	0.0	-0.53	0.91	0.87	—	3.9	0.006	0.73	0.0	0.04	25.78	0.00	1.003	14.56	1.60	2.2	97.8	0.0	1.18	0.66	0.92	0.88	—	27555	2098	18	518	3	0	0	logfile
✔	9J18	61071	2025-06-06	2024-08-03	3.5	3.78	3.57	3.9	0.005	0.93	4.0	0.06	15.23	0.00	2.105	10.02	0.55	10.8	89.2	0.0	-1.88	0.58	0.80	1.48	3.9	0.003	0.69	0.0	0.04	15.61	0.00	2.294	5.12	3.97	10.1	89.9	0.0	-0.76	1.18	0.56	0.79	1.02	6944	930	4	0	2	0	0	logfile

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