Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZGT	60090	2025-06-07	2024-05-09	2.96	3.17	2.99	3.2	0.004	0.81	0.0	0.05	18.71	0.01	2.251	2.24	4.14	4.9	95.0	0.1	-0.71	0.65	0.81	3.12	3.2	0.002	0.60	0.0	0.04	17.34	0.00	2.438	3.53	2.52	4.1	95.8	0.1	1.08	0.32	0.64	0.81	2.97	8915	1077	13	0	14	0	0	logfile
✔	8ZGE	60076	2025-06-18	2024-05-09	3.4	3.61	3.42	3.5	0.006	0.92	6.0	0.06	17.97	0.01	1.877	8.26	0.75	7.5	92.2	0.2	-1.79	0.66	0.67	1.84	3.5	0.003	0.62	0.0	0.04	17.71	0.00	2.089	5.91	2.77	6.3	93.6	0.1	-1.07	1.93	0.72	0.81	1.86	21426	2586	10	4	20	0	0	logfile
✔	8ZGH	60079	2025-06-29	2024-05-09	3.93	4.21	3.98	4.1	0.004	0.67	0.0	0.05	16.29	0.00	1.890	9.37	0.35	6.9	93.0	0.1	-1.10	0.70	0.67	1.76	4.1	0.003	0.64	0.0	0.04	16.06	0.00	2.030	6.79	3.38	5.6	94.3	0.1	-0.76	0.39	0.71	0.68	1.72	34092	5172	14	0	15	0	0	logfile
✔	9BQH	44799	2025-06-16	2024-05-09	2.27	2.43	2.26	2.5	0.006	0.84	0.0	0.05	16.67	0.00	2.125	2.28	0.00	2.2	97.8	0.0	-0.51	0.66	0.81	4.98	2.6	0.003	0.55	0.0	0.04	14.44	0.00	2.463	2.34	0.74	1.5	98.5	0.0	0.13	0.98	0.65	0.82	5.06	18483	1122	18	0	36	390	8664	logfile
✔	8ZGC	60075	2025-06-29	2024-05-09	3.58	3.87	3.62	3.7	0.005	0.88	0.0	0.05	16.37	0.00	2.151	7.64	0.66	6.6	93.1	0.3	-1.34	0.72	0.69	2.04	3.7	0.006	0.74	2.0	0.05	15.98	0.00	2.116	6.21	4.04	5.1	94.8	0.1	-0.39	1.16	0.72	0.69	1.97	34210	5172	14	4	20	0	0	logfile
✔	9BQ5	44797	2025-06-27	2024-05-09	2.36	3.13	2.47	2.8	0.011	1.79	17.0	0.10	15.47	0.02	2.503	0.87	3.62	2.1	97.6	0.3	0.06	0.83	0.78	4.52	2.8	0.004	0.72	0.0	0.04	18.60	0.00	2.491	13.65	2.21	2.1	97.8	0.0	2.72	1.30	0.84	0.85	4.37	33214	4128	24	0	0	0	0	logfile
✔	9F9Y	50263	2025-06-21	2024-05-09	2.8	3.34	2.80	3.1	0.004	0.53	0.0	0.04	10.39	0.00	2.261	5.28	0.52	2.3	97.7	0.0	0.45	0.82	0.90	3.88	3.1	0.003	0.56	0.0	0.04	12.11	0.00	2.546	5.22	1.61	2.2	97.8	0.0	0.45	0.38	0.82	0.90	3.32	24810	3078	15	0	57	0	0	logfile
✔	8ZGo	60085	2025-06-05	2024-05-09	2.25	2.86	2.26	2.7	0.023	1.32	6.0	0.07	16.96	0.01	2.182	7.56	3.01	3.3	96.7	0.0	0.47	0.64	0.86	3.30	2.7	0.004	0.58	0.0	0.04	16.58	0.00	2.197	3.91	1.34	2.0	98.0	0.0	2.24	0.40	0.70	0.91	3.94	5980	742	2	0	4	32	0	logfile
✔	8ZGS	60089	2025-06-07	2024-05-09	3.04	3.27	3.07	3.3	0.007	0.76	0.0	0.05	18.16	0.01	2.217	6.51	0.61	4.3	95.7	0.0	0.87	0.62	0.79	2.99	3.3	0.003	0.57	0.0	0.04	17.13	0.00	2.440	3.87	3.33	3.9	96.1	0.0	1.31	0.32	0.64	0.81	2.73	8915	1077	13	0	14	0	0	logfile
✔	8ZGP	60086	2025-06-10	2024-05-09	1.89	1.80	1.89	1.9	0.006	0.72	0.0	0.05	16.72	0.01	2.066	6.29	0.90	2.4	97.6	0.0	1.72	0.65	0.84	6.17	1.9	0.006	0.68	0.0	0.04	16.70	0.00	2.034	4.74	0.65	2.6	97.4	0.0	1.94	0.78	0.72	0.90	6.07	12156	1484	6	0	8	126	0	logfile
✘	8ZFL	60064	2025-06-15	2024-05-08	2.61	2.71	2.56	2.8	0.003	0.51	0.0	0.04	16.53	0.00	2.236	3.12	0.69	2.1	97.9	0.0	1.07	0.69	0.87	4.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17070	2060	20	0	25	0	0	logfile
✔	9BPU	44790	2025-06-04	2024-05-08	3.26	3.28	3.26	3.4	0.006	0.78	0.0	0.05	17.75	0.00	2.216	8.90	0.64	5.0	95.0	0.0	-0.01	0.71	0.77	2.29	3.4	0.003	0.63	0.0	0.04	16.73	0.00	2.524	6.67	2.78	3.1	96.9	0.0	0.46	0.34	0.70	0.78	1.98	4318	529	5	0	5	0	0	logfile
✔	9BPV	44791	2025-06-04	2024-05-08	3.0	2.88	2.94	3.1	0.007	0.93	0.0	0.06	16.58	0.01	2.205	8.58	0.61	1.9	98.1	0.0	0.62	0.62	0.78	2.15	3.1	0.003	0.60	0.0	0.04	17.59	0.00	2.568	5.49	1.83	3.0	97.0	0.0	0.83	0.45	0.67	0.83	2.32	4417	542	4	0	2	0	0	logfile
✘	8ZFM	60065	2025-06-15	2024-05-08	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17120	2060	25	0	30	10	0	logfile
✔	8ZFZ	60072	2025-06-08	2024-05-08	3.3	3.54	3.33	3.6	0.004	0.72	0.0	0.04	18.50	0.00	2.158	20.94	0.72	7.4	92.5	0.2	-1.00	0.51	0.63	0.59	3.6	0.003	0.70	0.0	0.04	18.52	0.00	2.436	12.81	5.54	7.0	92.8	0.2	-0.73	0.41	0.59	0.69	0.74	9065	1155	5	0	0	0	0	logfile
✔	8ZF4	60050	2025-06-04	2024-05-07	3.05	2.37	2.34	2.2	0.006	0.95	0.0	0.05	13.23	0.01	2.290	9.68	0.54	7.4	92.6	0.0	-0.59	0.79	0.77	4.07	2.9	0.004	0.72	0.0	0.04	15.66	0.01	2.467	6.95	1.63	6.7	93.3	0.0	1.06	1.00	0.80	0.79	3.66	2073	288	1	0	0	0	0	logfile
✔	8ZF7	60052	2025-06-04	2024-05-07	3.15	2.41	2.43	2.9	0.007	0.90	1.0	0.06	12.64	0.01	2.300	9.64	0.54	6.0	94.0	0.0	-0.35	0.72	0.77	2.96	2.9	0.004	0.74	0.0	0.04	14.80	0.01	2.598	5.44	0.00	4.9	95.1	0.0	1.64	0.46	0.73	0.79	1.99	2076	288	1	0	0	0	0	logfile
✔	8ZF6	60051	2025-06-06	2024-05-07	2.98	2.27	2.88	2.9	0.009	0.80	3.0	0.06	12.40	0.01	2.120	8.51	0.62	4.7	95.3	0.0	-0.35	0.81	0.78	3.84	2.9	0.004	0.65	0.0	0.04	15.66	0.00	2.433	6.32	2.25	3.5	96.5	0.0	0.54	1.59	0.84	0.83	3.76	8284	1129	5	0	0	0	0	logfile
✔	8ZFA	60054	2025-06-07	2024-05-07	2.96	2.20	2.83	2.0	0.004	0.74	3.0	0.06	12.50	0.01	1.845	10.39	0.50	4.8	95.2	0.0	0.22	0.75	0.72	3.82	1.9	0.003	0.69	0.0	0.04	15.66	0.01	2.547	8.28	2.86	4.1	95.9	0.0	0.57	1.18	0.78	0.78	3.15	8313	1134	5	0	0	0	0	logfile
✔	8ZFB	60055	2025-06-04	2024-05-07	3.78	2.07	2.33	1.8	0.005	0.98	2.0	0.07	13.25	0.01	1.786	10.45	0.52	8.2	91.8	0.0	0.06	0.57	0.55	3.32	1.4	0.003	0.69	0.0	0.04	14.82	0.01	2.583	3.65	2.59	4.3	95.7	0.0	2.28	0.41	0.62	0.60	2.71	2088	286	1	0	0	0	0	logfile

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