Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9C4o	45192	2024-07-20	2024-06-04	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10166	661	2	0	2	111	4883	logfile
✔	8ZND	60268	2024-07-18	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.48	0.0	0.04	16.94	0.00	2.274	5.00	0.29	1.7	98.3	0.0	1.62	0.47	0.53	0.92	4.10	3334	416	2	0	1	24	0	logfile
✔	8ZNB	60266	2024-07-18	2024-05-26	2.53	2.68	2.16	2.7	0.007	0.95	0.0	0.05	15.55	0.00	2.421	7.24	2.06	1.2	98.8	0.0	0.61	0.55	0.89	4.44	2.6	0.003	0.55	0.0	0.04	17.29	0.00	2.226	6.34	0.88	1.4	98.6	0.0	1.18	0.90	0.51	0.91	3.83	3342	416	2	0	1	21	0	logfile
✔	8ZNG	60270	2024-07-18	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.51	0.0	0.04	18.13	0.00	2.258	6.47	2.35	2.4	97.6	0.0	1.18	0.81	0.54	0.92	3.93	3347	416	2	0	2	16	0	logfile
✔	8ZNC	60267	2024-07-18	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.005	0.62	0.0	0.05	19.04	0.01	2.148	5.87	1.76	2.2	97.8	0.0	0.86	0.94	0.51	0.92	4.11	3356	416	2	0	3	24	0	logfile
✔	9FGU	50428	2024-07-18	2024-05-25	4.3	4.49	4.25	4.3	0.003	0.72	0.0	0.05	13.96	0.00	2.123	19.81	0.29	4.9	95.1	0.0	-1.32	0.75	0.70	—	4.3	0.003	0.74	0.0	0.05	13.77	0.00	2.232	19.65	0.00	6.1	93.9	0.0	-1.32	1.04	0.76	0.71	—	3241	413	3	0	1	0	0	logfile
✔	9FGS	50420	2024-07-18	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.66	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.003	0.62	0.0	0.04	15.48	0.00	2.213	11.21	3.22	8.7	91.1	0.2	-1.85	0.40	0.78	0.81	—	3187	412	3	0	1	0	0	logfile
✔	9FGT	50424	2024-07-18	2024-05-25	3.8	4.00	3.78	4.0	0.005	0.70	0.0	0.05	14.86	0.00	2.094	7.67	0.00	7.8	92.2	0.0	-1.56	0.72	0.81	2.12	4.0	0.003	0.67	0.0	0.04	15.01	0.00	2.184	7.67	3.22	8.3	91.7	0.0	-1.60	0.38	0.73	0.80	1.95	2921	373	3	0	1	0	0	logfile
✔	9FGR	50418	2024-07-18	2024-05-25	4.0	4.21	3.96	4.1	0.003	0.58	0.0	0.04	12.55	0.00	2.176	8.75	0.00	6.4	93.6	0.0	-1.53	0.76	0.82	—	4.1	0.003	0.65	0.0	0.04	14.33	0.00	2.184	11.29	3.77	6.9	93.1	0.0	-1.16	0.99	0.77	0.82	—	3209	412	3	0	1	1	0	logfile
✔	8ZMS	60255	2024-07-18	2024-05-23	3.7	3.97	3.83	4.0	0.007	1.15	0.0	0.05	9.68	0.01	2.349	3.51	0.00	5.0	95.0	0.0	-3.71	0.44	0.76	2.35	4.0	0.004	0.77	0.0	0.04	14.24	0.00	2.330	9.53	2.94	2.9	97.1	0.0	0.99	0.62	0.46	0.76	1.25	2920	386	2	0	1	0	0	logfile
✔	9FEE	50339	2024-07-19	2024-05-19	3.03	3.26	3.12	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	3.3	0.003	0.59	0.0	0.04	16.22	0.00	2.169	5.21	3.22	7.4	92.6	0.0	0.14	0.92	0.74	0.86	2.72	9112	1236	4	0	0	0	0	logfile
✔	9FEF	50340	2024-07-20	2024-05-19	2.98	3.19	3.00	3.2	0.008	0.83	1.0	0.05	16.73	0.01	2.173	6.86	0.58	5.7	94.0	0.3	0.09	0.74	0.86	2.49	3.2	0.003	0.60	0.0	0.04	16.73	0.00	2.196	6.37	2.65	6.1	93.9	0.0	0.56	0.93	0.66	0.86	2.41	11192	1502	5	0	0	0	0	logfile
✘	8ZJF	60143	2024-07-20	2024-05-14	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10917	1419	4	0	6	0	0	logfile
✔	9BRY	44845	2024-07-23	2024-05-12	3.6	3.97	3.81	4.0	0.005	0.88	0.0	0.04	16.14	0.01	2.423	5.08	2.88	4.2	95.8	0.0	-0.33	0.59	0.66	0.71	4.0	0.004	0.76	0.0	0.04	17.13	0.00	2.136	13.57	6.36	4.8	95.1	0.0	0.50	4.46	0.59	0.67	0.65	23530	3066	20	0	12	0	0	logfile
✔	9BRZ	44846	2024-07-24	2024-05-12	3.8	4.20	3.95	4.1	0.006	0.92	0.0	0.04	16.83	0.01	2.117	5.44	3.59	4.7	95.3	0.0	-0.20	0.61	0.74	1.07	4.1	0.004	0.77	0.0	0.04	17.40	0.00	2.137	13.71	5.66	4.4	95.6	0.0	1.02	0.60	0.63	0.76	1.24	25204	3277	22	0	12	0	0	logfile
✔	9BP6	44762	2024-07-21	2024-05-07	3.1	3.37	3.02	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.003	0.55	0.0	0.04	16.83	0.00	1.986	6.92	2.82	2.1	97.9	0.0	0.81	0.68	0.77	0.84	3.10	13631	1732	8	0	8	0	0	logfile
✘	8ZEE	60026	2024-07-22	2024-05-06	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20218	2101	26	0	70	0	0	logfile
✔	9BKJ	44642	2024-07-19	2024-04-29	2.59	2.90	2.70	2.9	0.005	0.75	0.0	0.05	12.93	0.00	2.260	9.17	0.71	2.0	97.8	0.2	1.02	0.61	0.68	3.31	2.9	0.003	0.61	0.0	0.04	15.63	0.00	2.053	6.64	2.83	1.7	98.3	0.0	1.60	0.46	0.58	0.78	2.45	6795	891	6	0	1	0	0	logfile
✔	9BKK	44643	2024-07-19	2024-04-29	2.51	2.85	2.68	2.9	0.012	1.75	2.0	0.10	12.29	0.01	2.388	6.33	2.54	4.5	94.6	0.9	-1.67	0.46	0.61	2.41	2.9	0.003	0.65	0.0	0.04	15.80	0.00	2.138	8.56	2.82	2.3	97.7	0.0	1.29	1.15	0.57	0.74	2.09	6809	890	6	0	1	0	0	logfile
✔	8ZC1	39919	2024-07-18	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.004	0.64	0.0	0.05	13.51	0.00	2.213	12.41	0.00	5.7	94.3	0.0	-1.50	0.57	0.75	0.74	—	4570	597	3	0	0	0	0	logfile

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