Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AYX	44001	2024-07-24	2024-03-08	3.0	3.22	3.09	3.3	0.004	0.71	0.0	0.05	13.83	0.01	2.313	3.10	0.00	4.0	96.0	0.0	-1.09	0.66	0.79	2.73	3.2	0.003	0.55	0.0	0.04	15.54	0.00	2.187	5.28	2.50	3.6	96.4	0.0	0.24	0.43	0.68	0.83	2.84	24813	3123	6	0	30	0	0	logfile
✔	9AYY	44002	2024-07-24	2024-03-08	3.1	3.36	3.19	3.4	0.005	0.73	0.0	0.05	14.35	0.01	2.284	3.67	0.00	4.1	95.9	0.0	-1.28	0.65	0.78	2.46	3.4	0.004	0.56	0.0	0.05	15.10	0.00	2.140	6.13	1.07	4.3	95.7	0.0	-0.14	1.13	0.67	0.81	2.29	24813	3123	6	0	30	0	0	logfile
✔	9AYW	44000	2024-07-24	2024-03-08	3.0	3.21	3.04	3.2	0.005	0.78	0.0	0.06	14.17	0.01	2.290	2.83	0.00	4.0	96.0	0.0	-0.76	0.68	0.81	3.01	3.2	0.002	0.51	0.0	0.04	15.64	0.00	2.187	5.38	1.80	2.9	97.1	0.0	0.62	1.13	0.69	0.83	2.88	24813	3123	6	0	30	0	0	logfile
✘	9AYF	43990	2024-07-22	2024-03-07	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19630	2441	14	0	27	0	0	logfile
✔	9AYB	43984	2024-07-18	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.003	0.55	0.0	0.04	14.20	0.00	2.367	3.57	1.98	1.4	98.6	0.0	2.00	0.31	0.43	0.78	2.31	3347	428	1	0	0	0	0	logfile
✘	9AXF	43966	2024-07-23	2024-03-06	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21342	2607	15	0	40	0	0	logfile
✔	8YKW	39374	2024-07-19	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.005	0.61	0.0	0.04	15.84	0.00	2.168	6.02	2.16	2.9	97.1	0.0	1.62	0.41	0.64	0.86	3.21	8718	1124	6	0	1	0	0	logfile
✔	8YKX	39375	2024-07-19	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.002	0.55	0.0	0.04	15.66	0.00	2.197	6.19	1.39	1.9	98.1	0.0	1.58	0.86	0.60	0.84	3.84	8710	1121	6	0	1	0	0	logfile
✔	8S86	19798	2024-07-19	2024-03-05	2.8	3.06	2.71	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.004	0.73	0.0	0.05	15.86	0.00	2.149	19.33	3.29	3.3	96.7	0.0	-0.31	1.20	0.61	0.66	2.36	6177	785	2	0	0	0	0	logfile
✔	8YJY	39353	2024-07-18	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.65	0.0	0.04	17.77	0.00	2.231	8.66	4.18	4.0	96.0	0.0	1.64	0.84	0.66	0.74	1.71	4254	530	2	0	0	0	0	logfile
✔	9AUC	43877	2024-07-20	2024-02-28	2.4	2.09	2.10	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.004	0.61	0.0	0.04	16.42	0.00	2.198	6.46	1.74	2.5	97.5	0.0	0.92	0.66	0.64	0.83	3.76	10369	1275	11	0	10	16	0	logfile
✘	8YGJ	39253	2024-07-23	2024-02-26	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19466	1777	6	241	0	0	0	logfile
✔	8S5N	19743	2024-07-28	2024-02-24	3.4	3.65	3.37	3.6	0.008	0.99	0.0	0.07	16.30	0.01	1.208	5.18	0.06	5.6	94.3	0.0	-1.69	0.73	0.76	1.94	3.6	0.004	0.66	0.0	0.04	18.01	0.00	1.952	11.92	2.13	6.1	93.9	0.0	-0.29	0.41	0.71	0.81	1.64	44716	5249	31	129	11	0	0	logfile
✔	8YF0	39206	2024-07-19	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.66	0.0	0.04	16.87	0.00	2.195	14.24	2.37	3.0	97.0	0.0	1.01	0.47	0.53	0.65	0.48	9181	1159	2	0	0	0	0	logfile
✔	8YF1	39207	2024-07-19	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.57	0.0	0.04	16.79	0.00	2.095	11.50	1.96	2.7	97.3	0.0	1.55	0.30	0.42	0.63	0.64	9187	1156	4	0	2	0	0	logfile
✘	8S5L	19739	2024-07-24	2024-02-23	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27289	1740	8	0	6	0	13603	logfile
✔	8S52	19719	2024-07-28	2024-02-22	2.9	3.51	2.86	3.4	0.008	0.90	1.0	0.07	16.26	0.01	1.632	3.41	0.06	3.8	96.2	0.0	0.02	0.72	0.79	2.28	3.4	0.005	0.64	0.0	0.04	17.79	0.00	2.017	9.44	1.22	3.6	96.4	0.0	0.63	0.39	0.66	0.77	2.02	44875	5277	32	127	11	0	0	logfile
✔	8S51	19718	2024-07-28	2024-02-22	3.1	3.72	3.09	3.7	0.008	0.87	1.0	0.08	16.32	0.01	1.887	4.22	0.17	3.5	96.4	0.0	-2.17	0.71	0.77	1.89	3.7	0.004	0.67	1.0	0.04	17.91	0.00	1.956	10.04	1.33	3.4	96.5	0.0	0.46	0.40	0.54	0.69	1.57	44796	5272	31	124	11	0	0	logfile
✔	8S54	19720	2024-07-27	2024-02-22	3.4	4.12	3.33	3.9	0.005	0.99	1.0	0.08	15.63	0.01	1.522	6.84	0.03	5.3	94.6	0.0	-1.66	0.72	0.77	1.54	3.9	0.003	0.69	0.0	0.04	17.31	0.00	1.945	13.68	2.08	5.0	95.0	0.0	-0.06	1.15	0.73	0.79	1.53	36745	4343	26	95	10	0	0	logfile
✔	8S55	19726	2024-07-27	2024-02-22	3.4	4.14	—	4.0	0.005	0.82	0.0	0.08	15.61	0.01	1.747	11.88	0.00	5.7	94.2	0.0	0.29	0.72	0.75	1.65	3.9	0.003	0.66	0.0	0.04	17.47	0.00	2.029	12.62	2.05	5.5	94.5	0.0	0.30	0.50	0.73	0.79	1.55	38148	4514	27	95	10	0	0	logfile

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